Contig 001478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032F12Sequence670018961emb|CDP08456.1|3e-65unnamed protein product [Coffea canephora]301001478 (2)
JMSF046G20Sequence642007613 (4)emb|CDP08456.1|3e-26unnamed protein product [Coffea canephora]707001478 (2)ref|XP_011090167.1|144PREDICTED: uncharacterized protein LOC105170925 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF046G20+                       AAATGGGAACAGAACCAAAAGAGAGTGATTCTCGGAAATGAGAATGA
                      ____________________________________________________________
consensus                          AAATGGGAACAGAACCAAAAGAGAGTGATTCTCGGAAATGAGAATGA
 
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rJMSF046G20+          ATGGGTCGAGCAAGATGAGCCCGGTGTGTATATTACACTTACTTCCTTGCCAGGAGGCTT
                      ____________________________________________________________
consensus             ATGGGTCGAGCAAGATGAGCCCGGTGTGTATATTACACTTACTTCCTTGCCAGGAGGCTT
 
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rJMSF046G20+          GAAGGATCTTAAGCGTGTTCGATTCAGCCGGAAGAGGTTTAGTGAGAAACAGGCAGAACA
                      ____________________________________________________________
consensus             GAAGGATCTTAAGCGTGTTCGATTCAGCCGGAAGAGGTTTAGTGAGAAACAGGCAGAACA
 
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rJMSF046G20+          GTGGTGGGCAGAGAACCGAGCAAGAGTTTACAAACTGTACAATGTACGCATGTCTGATAA
                      ____________________________________________________________
consensus             GTGGTGGGCAGAGAACCGAGCAAGAGTTTACAAACTGTACAATGTACGCATGTCTGATAA
 
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rJMSF046G20+          GTCGAGCATTCCCACTGGAAGTGAAGAATAAGCCCATTGACATGCATGAGAATGCCATTA
                      ____________________________________________________________
consensus             GTCGAGCATTCCCACTGGAAGTGAAGAATAAGCCCATTGACATGCATGAGAATGCCATTA
 
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rJMSF046G20+          TACTACTCACTAAAGGTCTTTTTGTTACTGTCCTCAAAATTAGCCACAGGGATGGATGAT
                      ____________________________________________________________
consensus             TACTACTCACTAAAGGTCTTTTTGTTACTGTCCTCAAAATTAGCCACAGGGATGGATGAT
 
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rJMSF046G20+          CGCTTTCACTCGGTAAGAATCGAGGGTTGAATTAGAATTAGGCGTTTGCTTCTGGGTTTT
                      ____________________________________________________________
consensus             CGCTTTCACTCGGTAAGAATCGAGGGTTGAATTAGAATTAGGCGTTTGCTTCTGGGTTTT
 
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rJMSF046G20+          CTAGCCTCTTTTCCCATCATTCTTTTTGAGCACCCTAATTCTTATGGCTATGGTTTGTCA
                      ____________________________________________________________
consensus             CTAGCCTCTTTTCCCATCATTCTTTTTGAGCACCCTAATTCTTATGGCTATGGTTTGTCA
 
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rJMSF046G20+          TAGTTGTTCATTTCCTTTGACCCCCTCAATTTTTGCGTTCCTGGGGAATTGAGGGTTAGA
                      ____________________________________________________________
consensus             TAGTTGTTCATTTCCTTTGACCCCCTCAATTTTTGCGTTCCTGGGGAATTGAGGGTTAGA
 
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rJMSF046G20+          AATGTAAATTCAGCAGCTTAGTGTATAGCCGGCGGTCGGTCCTCTGTTGGGAAATAGCTT
                      ____________________________________________________________
consensus             AATGTAAATTCAGCAGCTTAGTGTATAGCCGGCGGTCGGTCCTCTGTTGGGAAATAGCTT
 
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rJMSF032F12+                                                    TTTTTTCATTGGAATGAA
rJMSF046G20+          GTAAATTCCACAGGCTTACTTTCCTGGGCTTCTTTTACTTTGTTTTTTCATTGGAATGAA
                      ____________________________________________________________
consensus             GTAAATTCCACAGGCTTACTTTCCTGGGCTTCTTTTACTTTGTTTTTTCATTGGAATGAA
 
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rJMSF032F12+          CTGACGACTGACAAAATTACATCTCAACAA                              
rJMSF046G20+          CTGACGACTGACAAAATTACATCTCAACAAATATTGAGGTAACTCATCTGAACAAATGCA
                      ____________________________________________________________
consensus             CTGACGACTGACAAAATTACATCTCAACAAATATTGAGGTAACTCATCTGAACAAATGCA