| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF036D22 | Sequence | 722 | 001476 (6) | gb|ADV02770.1| | 1e-94 | WCOR413-like cold acclimation protein [Ipomoea batatas] | 505 | 001476 (6) | gb|ADV02770.1| | 9e-55 | WCOR413-like cold acclimation protein [Ipomoea batatas] |
| JMSF046A10 | Sequence | 757 | 001476 (6) | gb|ADV02770.1| | 7e-99 | WCOR413-like cold acclimation protein [Ipomoea batatas] | 634 | 001476 (6) | gb|ADV02770.1| | 2e-78 | WCOR413-like cold acclimation protein [Ipomoea batatas] |
| JMSF050D07 | Sequence | 617 | 001476 (6) | gb|ADV02770.1| | 6e-96 | WCOR413-like cold acclimation protein [Ipomoea batatas] | 759 | 001476 (6) | gb|ADV02770.1| | 4e-95 | WCOR413-like cold acclimation protein [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
JMSF046A10- GGTGAAGGTTCAAAACTTCAAAGGGT
____________________________________________________________
consensus GGTGAAGGTTCAAAACTTCAAAGGGT
. : . : . : . : . : . :
JMSF046A10- CGTTTTCTTGTTTCATTATTAGTTTGACTTTATCTTGTGGTTGCTAAATTATTGAAGCAA
____________________________________________________________
consensus CGTTTTCTTGTTTCATTATTAGTTTGACTTTATCTTGTGGTTGCTAAATTATTGAAGCAA
. : . : . : . : . : . :
JMSF050D07- ATGGAGATTGATTCATCATCAGTGGCGAGTGATC
JMSF046A10- AGATGGGGAAGAAGAGCTTCTTGGCCATGGAGATTGATTCATCATCAGTGGCGAGTGATC
JMSF036D22- ATGGGGATTGATTCATCATCAGTGGCGAGTGATC
rJMSF050D07+ ATGGAGATTGATTCATCATCAGTGGCGAGTGATC
____________________________________________________________
consensus AGATGGGGAAGAAGAGCTTCTTGGCCATGGAGATTGATTCATCATCAGTGGCGAGTGATC
. : . : . : . : . : . :
JMSF050D07- TGATAGGTTCAGATTTGAAGGAGCTTGGAATGGCAGCCAAGAAGCTGGCAAATCATGCCA
JMSF046A10- TGATAGGTTCAGATTTGAAGGAGCTTGGAATGGCAGCCAAGAAGCTGGCAAATCATGTCA
JMSF036D22- TGATAGGTTCAGATTTGAAGGAGCTTGGAATGGCAGCCAAGAAGCTGGCAAATCATGCCA
rJMSF050D07+ TGATAGGTTCAGATTTGAAGGAGCTTGGAATGGCAGCCAAGAAGCTGGCAAATCATGCCA
____________________________________________________________
consensus TGATAGGTTCAGATTTGAAGGAGCTTGGAATGGCAGCCAAGAAGCTGGCAAATCATGCCA
. : . : . : . : . : . :
JMSF050D07- TCATGCTTGGTGGTGGGCTTGGCTTTGGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
JMSF046A10- TCATGCTTGGTGGTGGGCTTGGCTTTGGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
JMSF036D22- TCATGCTTGGTGGTGGGCTTGGCTTTGGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
rJMSF050D07+ TCATGCTTGGTGGTGGGCTTGGCTTTGGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
rJMSF046A10+ GGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
____________________________________________________________
consensus TCATGCTTGGTGGTGGGCTTGGCTTTGGGACATCATTCCTTTCCTGGGTTGCTTCCTTTG
. : . : . : . : . : . :
JMSF050D07- CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
JMSF046A10- CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
JMSF036D22- CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
rJMSF050D07+ CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
rJMSF046A10+ CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
____________________________________________________________
consensus CTGCAATTTACCTGTTGATTCTGGATCGAACCAACTGGAGGACCAACATGCTCACAACTC
. : . : . : . : . : . :
JMSF050D07- TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
JMSF046A10- TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
JMSF036D22- TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
rJMSF050D07+ TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
rJMSF036D22+ TGATTTTCAGCTTCTTGAGGGGAG
rJMSF046A10+ TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
____________________________________________________________
consensus TATTGATTCCTTACATCTTCTTCTCTCTTCCTTCATTGATTTTCAGCTTCTTGAGGGGAG
. : . : . : . : . : . :
JMSF050D07- ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
JMSF046A10- ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
JMSF036D22- ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
rJMSF050D07+ ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
rJMSF036D22+ ATGNGGGCAAANGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
rJMSF046A10+ ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
____________________________________________________________
consensus ATGTGGGCAAATGGATCTGTTTGATTGCTGTTATCATTCGCCTTTTCTTCCCCAGACATT
. : . : . : . : . : . :
JMSF050D07- TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
JMSF046A10- TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
JMSF036D22- TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
rJMSF050D07+ TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
rJMSF036D22+ TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
rJMSF046A10+ TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
____________________________________________________________
consensus TTCCAGATTGGTTAGAAGCCCCTGCAGCTCTGATCCTTCTGATCGTGGTCGCTCCCGGGG
. : . : . : . : . : . :
JMSF050D07- TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
JMSF046A10- TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
JMSF036D22- TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
rJMSF050D07+ TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
rJMSF036D22+ TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
rJMSF046A10+ TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
____________________________________________________________
consensus TGTTTGCAGGCACACTGAGGGGAATGTGGGTTGGTGTGGCAATTTGCCTGATTATTGGGT
. : . : . : . : . : . :
JMSF050D07- GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
JMSF046A10- GCTATTTGCTGCAAGAACACATCANAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
JMSF036D22- GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
rJMSF050D07+ GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
rJMSF036D22+ GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
rJMSF046A10+ GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
____________________________________________________________
consensus GCTATTTGCTGCAAGAACACATCAGAGCCTCTGGTGGGTTCAGAAACTCCTTCACCAAAG
. : . : . : . : . : . :
JMSF050D07- CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
JMSF046A10- CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
JMSF036D22- CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
rJMSF050D07+ CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
rJMSF036D22+ CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
rJMSF046A10+ CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
____________________________________________________________
consensus CCCATGGCATCTCAAACACTGTTGGAATTGTCCTCCTTTTAGTATATCCTGTCTGGGCTT
. : . : . : . : . : . :
JMSF050D07- TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAA
JMSF046A10- TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCANAACCATTTGCGATTGCCA
JMSF036D22- TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCANAACCATTTGCGATTGCCA
rJMSF050D07+ TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCAGAACCATTTGCGATTGCCA
rJMSF036D22+ TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCAGAACCATTTGCGATTGCCA
rJMSF046A10+ TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCAGAACCATTTGCGATTGCCA
____________________________________________________________
consensus TGGTTCTTGACATTCTGTGAGTCAAAAAAAACACCAAATCAGAACCATTTGCGATTGCCA
. : . : . : . : . : . :
JMSF046A10- TTCGTGTCGTT
JMSF036D22- TTCGTGTCGTTTGCAGTGTGCCTTTCANAAATTTGCTCATTTCCACCATTAATGGCTAAA
rJMSF050D07+ TTCGTGTCGTNTGCAGTGTGCCTTTCAGAAATTTGCTCATTTCCACCATTAATGGCTAAA
rJMSF036D22+ TTCGTGTCGTTTGCAGTGTGCCTTTCAGAAATTTGCTCATTTCCACCATTAATGGCTAAA
rJMSF046A10+ TTCGTGTCGTTTGCAGTGTGCCTTTCAGAAATTTGCTCATTTCCACCATTAATGGCTAAA
____________________________________________________________
consensus TTCGTGTCGTTTGCAGTGTGCCTTTCAGAAATTTGCTCATTTCCACCATTAATGGCTAAA
. : . : . : . : . : . :
JMSF036D22- CCTGCAANGTTCTTGCAGGTC
rJMSF050D07+ CCTGCAAAGTTCTTGCAGGTC
rJMSF036D22+ CCTGCAAAGTTCTTGCAGGTC
rJMSF046A10+ CCTGCAAAGTTCTTGCAGGTCATGTATTAGTGTCTGGTTGTTGTGTGTGCATAAAGATAC
____________________________________________________________
consensus CCTGCAAAGTTCTTGCAGGTCATGTATTAGTGTCTGGTTGTTGTGTGTGCATAAAGATAC