Contig 001475:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF046K07-                                               GCTCGCTCGCTTCCTTCCTCTTCG
                      ____________________________________________________________
consensus                                                 GCTCGCTCGCTTCCTTCCTCTTCG
 
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JMSF046K07-           TCCTTGAAATATGTCGGTTACCAGCTTCAATGGAAGCCGGAACTCGGATATGCTAAGGCT
JMSF045N03-                     ATGTCGGTTACCAGCTTCAATGGAAGCCGGAACTCGGATATGCTAAGGCT
JMSF045M03-                     ATGTCGGTTACCAGCTTCAATGGAAGCCGGAACTCGGATATGCTAAGGCT
                      ____________________________________________________________
consensus             TCCTTGAAATATGTCGGTTACCAGCTTCAATGGAAGCCGGAACTCGGATATGCTAAGGCT
 
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JMSF046K07-           TGAACTTTAGTTTTCGCTATCTGCAGCTCTGCGTCGTCGCCTCCTCAAAATCTTACAGTA
JMSF045N03-           TGAACTTTAGTTTTCGCTATCTGCAGCTCTGCGTCGTCGCCTCCTCAAAATCTTACAGTA
JMSF045M03-           TGAACTTTAGTTTTCGCTATCTGCAGCTCTGCGTCGTCGCCTCCTCAAAATCTTACAGTA
                      ____________________________________________________________
consensus             TGAACTTTAGTTTTCGCTATCTGCAGCTCTGCGTCGTCGCCTCCTCAAAATCTTACAGTA
 
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JMSF046K07-           AAGGTTTTATTAGCCTAAGGAATAGGCCGTGGCTTGATTAATTTCCATATTTTTGCAAGT
JMSF045N03-           AAGGTTTTATTAGCCTAAGGAATAGGCCGTGGCTTGATTAATTTCCATATTTTTGCAAGT
JMSF045M03-           AAGGTTTTATTAGCCTAAGGAATAGGCCGTGGCTTGATTAATTTCCATATTTTTGCAAGT
                      ____________________________________________________________
consensus             AAGGTTTTATTAGCCTAAGGAATAGGCCGTGGCTTGATTAATTTCCATATTTTTGCAAGT
 
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JMSF046K07-           AGCTATGCAACATACTGGTGCAAGAGATACCCAACCCCGTGACTGCAACAGCCAGAAGGT
JMSF045N03-           AGCTATGCAACATACTGGTGCAAGAGATACCCAACCCCGTGACTGCAACAGCCAGAAGGT
JMSF045M03-           AGCTATGCAACATACTGGTGCAAGAGATACCCAACCCCGTGACTGCAACAGCCAGAAGGT
                      ____________________________________________________________
consensus             AGCTATGCAACATACTGGTGCAAGAGATACCCAACCCCGTGACTGCAACAGCCAGAAGGT
 
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JMSF046K07-           TCACCCCCAGCCTATGGAAGAAGCTGCAAATCAAAATCCGGAAGCTTTGGAAGCTCTAAT
JMSF045N03-           TCACCCCCAGCCTATGGAAGAAGCTGCAAATCAAAATCCGGAAGCTTTGGAAGCTCTAAT
JMSF045M03-           TCACCCCCAGCCTATGGAAGAAGCTGCAAATCAAAATCCGGAAGCTTTGGAAGCTCTAAT
                      ____________________________________________________________
consensus             TCACCCCCAGCCTATGGAAGAAGCTGCAAATCAAAATCCGGAAGCTTTGGAAGCTCTAAT
 
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JMSF046K07-           ATCTAAGATTTTTACGAATGTATCGTCTTTGAAGTCAGCCTACATTCAACTTCAATCTGC
JMSF045N03-           ATCTAAGATTTTTACGAATGTATCGTCTTTGAAGTCAGCCTACATTCAACTTCAATCTGC
JMSF045M03-           ATCTAAGATTTTTACGAATGTATCGTCTTTGAAGTCAGCCTACATTCAACTTCAATCTGC
                      ____________________________________________________________
consensus             ATCTAAGATTTTTACGAATGTATCGTCTTTGAAGTCAGCCTACATTCAACTTCAATCTGC
 
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JMSF046K07-           TCATACTCCTTATGACCCCGACAAAATTCAGAGTGCTGATAAACTTGTTATCTCGGAGTT
JMSF045N03-           TCATACTCCTTATGACCCCGACAAAATTCAGAGTGCTGATAAACTTGTTATCTCGGAGTT
JMSF045M03-           TCATACTCCTTATGACCCCGACAAAATTCAGAGTGCTGATAAACTTGTTATCTCGGAGTT
                      ____________________________________________________________
consensus             TCATACTCCTTATGACCCCGACAAAATTCAGAGTGCTGATAAACTTGTTATCTCGGAGTT
 
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JMSF046K07-           GAAGACTCTCTCTGAACTTAAGCATTTCTATCGGGAGCATAACCCTAAGCCGGTTTGTGC
JMSF045N03-           GAAGACTCTCTCTGAACTTAAGCATTTCTATCGGGAGCATAACCCTAAGCCGGTTTGTGC
JMSF045M03-           GAAGACTCTCTCTGAACTTAAGCATTTCTATCGGGAGCATAACCCTAAGCCGGTTTGTGC
                      ____________________________________________________________
consensus             GAAGACTCTCTCTGAACTTAAGCATTTCTATCGGGAGCATAACCCTAAGCCGGTTTGTGC
 
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JMSF046K07-           TTCTCCTCAGGACTCGCGATTAGCATCTGAAATTCAAGAGCAGCAAAGCTTGTTGAAGAC
JMSF045N03-           TTCTCCTCAGGACTCGCGATTAGCATCTGAAATTCAAGAGCAGCAAAGCTTGTTGAAGAC
JMSF045M03-           TTCTCCTCAGGACTCGCGATTAGCATCTGAAATTCAAGAGCAGCAAAGCTTGTTGAAGAC
                      ____________________________________________________________
consensus             TTCTCCTCAGGACTCGCGATTAGCATCTGAAATTCAAGAGCAGCAAAGCTTGTTGAAGAC
 
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JMSF046K07-           ATATGAGGTGATGGTGAAGAAATTCCAGTCCGAGATTCAGAATAAAGATTCTGATATTGT
JMSF045N03-           ATATGAGGTGATGGTGAAGAAATTCCAGTCCGAGATTCAGAATAAAGATTCTGATATTGT
JMSF045M03-           ATATGAGGTGATGGTGAAGAAATTCCAGTCCGAGATTCAGAATAAAGATTCTGATATTGT
                      ____________________________________________________________
consensus             ATATGAGGTGATGGTGAAGAAATTCCAGTCCGAGATTCAGAATAAAGATTCTGATATTGT
 
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JMSF046K07-           TCAGTTGCAGCAACAAATCCAGGA                                    
JMSF045N03-           TCAGTTGCAGCAACAAATCCAGGAGGCGAGTCAGAAGCAAGTTAAGCTGGAGAAGAA   
JMSF045M03-           TCAGTTGCAGCAACAAATCCAGGAGGCGAGTCAGAAGCAAGTTAAGCTGGAGAAGAACCT
                      ____________________________________________________________
consensus             TCAGTTGCAGCAACAAATCCAGGAGGCGAGTCAGAAGCAAGTTAAGCTGGAGAAGAACCT
 
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JMSF045M03-           CAAACTTAGGGGCTTATCAGCCCGAGAATGTGATGGGATTGGCAGTGAAAATGGATTCTT
                      ____________________________________________________________
consensus             CAAACTTAGGGGCTTATCAGCCCGAGAATGTGATGGGATTGGCAGTGAAAATGGATTCTT
 
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JMSF045M03-           CTCGGTGGATCTGACGCCCGATCTTTTCAAGTCATCTGTGGAATCCGCCTATAGAGCTAT
rJMSF046K07+                                                          CTATAGAGCTAT
                      ____________________________________________________________
consensus             CTCGGTGGATCTGACGCCCGATCTTTTCAAGTCATCTGTGGAATCCGCCTATAGAGCTAT
 
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JMSF045M03-           CCATGATTTTTCCCAGCCAGTTATT-AACATGATGAAAGCAGCTGGAT-GGGATCTC   
rJMSF046K07+          CCATGATTTTTCCAAGCCAGTTATT-AACATGATGAAAGCAGCTGGAT-GGGATCTCGAT
rJMSF045N03+           CATGATTTTTCCNAGCCAGTTATTAAACATGATGAAAGCAGCTGGAT-GGGATCTCGAT
rJMSF045M03+                                    AACATGATGAAAGCAGCTGGATGGGGATCTCGAT
                      ____________________________________________________________
consensus             CCATGATTTTTCCCAGCCAGTTATT-AACATGATGAAAGCAGCTGGAT-GGGATCTCGAT
 
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rJMSF046K07+          GAAGCAGCAAACTCCATAGAGCCGGATGTAACCTACGCAAAGAGAGCTCACAAGAAATAT
rJMSF045N03+          GAAGCAGCAAACTCCATAGAGCCGGATGTAACCTACGCAAAGAGAGCTCACAAGAAATAT
rJMSF045M03+          GAAGCAGCAAACTCCATAGAGCCGGATGTAACCTACGCAAAGAGAGCTCACAAGAAATAT
                      ____________________________________________________________
consensus             GAAGCAGCAAACTCCATAGAGCCGGATGTAACCTACGCAAAGAGAGCTCACAAGAAATAT
 
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rJMSF046K07+          GCATTCGAATCGCATATTTGCCAAAGAATGTTCAGCGGGTTTCAGGAAGAGTGCTTCTCT
rJMSF045N03+          GCATTCGAATCGCATATTTGCCAAAGAATGTTCAGCGGGTTTCAGGAAGAGTGCTTCTCT
rJMSF045M03+          GCATTCGAATCGCATATTTGCCAAAGAATGTTCAGCGGGTTTCAGGAAGAGTGCTTCTCT
                      ____________________________________________________________
consensus             GCATTCGAATCGCATATTTGCCAAAGAATGTTCAGCGGGTTTCAGGAAGAGTGCTTCTCT
 
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rJMSF046K07+          GTGAAACCCGAGGATCCAACAGTAACAAAGGAAAGTTTCTTCCACCAGTATCTTGCATTG
rJMSF045N03+          GTGAAACCCGAGGATCCAACAGTAACAAAGGAAAGTTTCTTCCACCAGTATCTTGCATTG
rJMSF045M03+          GTGAAACCCGAGGATCCAACAGTAACAAAGGAAAGTTTCTTCCACCAGTATCTTGCATTG
                      ____________________________________________________________
consensus             GTGAAACCCGAGGATCCAACAGTAACAAAGGAAAGTTTCTTCCACCAGTATCTTGCATTG
 
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rJMSF046K07+          AGAGAAATGGATCCACTAGATGCCGTGGGCCAAAATCCAGATTCCAATTTCGGGAAGTTT
rJMSF045N03+          AGAGAAATGGATCCACTAGATGCCGTGGGCCAAAATCCAGATTCCAATTTCGGGAAGTTT
rJMSF045M03+          AGAGAAATGGATCCACTAGATGCCGTGGGCCAAAATCCAGATTCCAATTTCGGGAAGTTT
                      ____________________________________________________________
consensus             AGAGAAATGGATCCACTAGATGCCGTGGGCCAAAATCCAGATTCCAATTTCGGGAAGTTT
 
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rJMSF046K07+          TGCAAAAGCAAATACCTAGCAGTGCTTCATCCAAGGATGGAGGTCTCATTTTTCGGGAAC
rJMSF045N03+          TGCAAAAGCAAATACCTAGCAGTGCTTCATCCAAGGATGGAGGTCTCATTTTTCGGGAAC
rJMSF045M03+          TGCAAAAGCAAATACCTAGCAGTGCTTCATCCAAGGATGGAGGTCTCATTTTTCGGGAAC
                      ____________________________________________________________
consensus             TGCAAAAGCAAATACCTAGCAGTGCTTCATCCAAGGATGGAGGTCTCATTTTTCGGGAAC
 
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rJMSF046K07+          TTGGATCAACGAAACTATGTCACTGGGGGTGGACATCCAAGGACAGCATTCTACCAGGTT
rJMSF045N03+          TTGGATCAACGAAACTATGTCACTGGGGGTGGACATCCAAGGACAGCATTCTACCAGGTT
rJMSF045M03+          TTGGATCAACGAAACTATGTCACTGGGGGTGGACATCCAAGGACAGCATTCTACCAGGTT
                      ____________________________________________________________
consensus             TTGGATCAACGAAACTATGTCACTGGGGGTGGACATCCAAGGACAGCATTCTACCAGGTT
 
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rJMSF046K07+          TTTCTAAAGATGGCAAAATCCATCTGGCTTTTGCATAAGCTGGCATATTCTTTCGAGCCT
rJMSF045N03+          TTTCTAAAGATGGCAAAATCCATCTGGCTTTTGCATAAGCTGGCATATTCTTTCGAGCCT
rJMSF045M03+          TTTCTAAAGATGGCAAAATCCATCTGGCTTTTGCATAAGCTGGCATATTCTTTCGAGCCT
                      ____________________________________________________________
consensus             TTTCTAAAGATGGCAAAATCCATCTGGCTTTTGCATAAGCTGGCATATTCTTTCGAGCCT
 
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rJMSF046K07+          CCCGTGAAGATTTTTCAGGTCAAGAAGGGAAGTGTGTTCTCAGAAGATTATATGGACAGT
rJMSF045N03+          CCCGTGAAGATTTTTCAGGTCAAGAAGGGAAGTGTGTTCTCAGAAGATTATATGGACAGT
rJMSF045M03+          CCCGTGAAGATTTTTCAGGTCAAGAAGGGAAGTGTGTTCTCAGAAGATTATATGGACAGT
                      ____________________________________________________________
consensus             CCCGTGAAGATTTTTCAGGTCAAGAAGGGAAGTGTGTTCTCAGAAGATTATATGGACAGT
 
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rJMSF046K07+          GTTTTGAAGAATTTCATCGTCGAAAACAGCGAGCAGAAACCAAAGGTCGGGCTGATGGTC
rJMSF045N03+          GTTTTGAAGAATTTCATCGTCGAAAACAGCGAGCAGAAACCAAAGGTCGGGCTGATGGTC
rJMSF045M03+          GTTTTGAAGAATTTCATCGTCGAAAACAGCGAGCAGAAACCAAAGGTCGGGCTGATGGTC
                      ____________________________________________________________
consensus             GTTTTGAAGAATTTCATCGTCGAAAACAGCGAGCAGAAACCAAAGGTCGGGCTGATGGTC
 
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rJMSF046K07+          ATGCCCGGTTTCTACATCGACGAATGCATAATCCAATGCCAGGTCTACTTAACAGGTGTG
rJMSF045N03+          ATGCCCGGTTTCTACATCGACGAATGCATAATCCAATGCCAGGTCTACTTAACAGGTGTG
rJMSF045M03+          ATGCCCGGTTTCTACATCGACGAATGCATAATCCAATGCCAGGTCTACTTAACAGGTGTG
                      ____________________________________________________________
consensus             ATGCCCGGTTTCTACATCGACGAATGCATAATCCAATGCCAGGTCTACTTAACAGGTGTG
 
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rJMSF046K07+          AAGGTTACTGATTGATTCTAATTCCAATCCACACCTTTATTGTTGAAATTACTCCTTAAC
rJMSF045N03+          AAGGTTACTGATTGATTCTAATTCCAATCCACACCTTTATTGTTGAAATTACTCCTTAAC
rJMSF045M03+          AAGGTTACTGATTGATTCTAATTCCAATCCACACCTTTATTGTTGAAATTACTCCTTAAC
                      ____________________________________________________________
consensus             AAGGTTACTGATTGATTCTAATTCCAATCCACACCTTTATTGTTGAAATTACTCCTTAAC
 
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rJMSF046K07+          TTATATGTTCTG                                                
rJMSF045N03+          TTATATGTTCTGTGTGATTTTCATTCGGTTTTATGTGCCATCTGAAAATATGCCATGGA 
rJMSF045M03+          TTATATGTTCTGTGTGATTTTCATTCGGTTTTATGTGCCATCTGAAAATATGCCATGGAT
                      ____________________________________________________________
consensus             TTATATGTTCTGTGTGATTTTCATTCGGTTTTATGTGCCATCTGAAAATATGCCATGGAT