Contig 001471:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040L03+                                                      GAGAGAAGCCGAAGCA
                      ____________________________________________________________
consensus                                                         GAGAGAAGCCGAAGCA
 
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rJMSF040L03+          ACAGCAGCTGCTGCTTTTGCCACCGGAGATGAATATAGTATCCTCTTAAACGACATCCAA
                      ____________________________________________________________
consensus             ACAGCAGCTGCTGCTTTTGCCACCGGAGATGAATATAGTATCCTCTTAAACGACATCCAA
 
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rJMSF040L03+          GGTNTTTCAGCTGCATCAAAGCTATCATTTCGTAACTCACGCAATTACAACTNTGCAGCT
                      ____________________________________________________________
consensus             GGTNTTTCAGCTGCATCAAAGCTATCATTTCGTAACTCACGCAATTACAACTNTGCAGCT
 
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rJMSF040L03+          TTAGTCATTCAAAAGAAATATCGAGGATGGAAAGGGCGGAAGGACTTCCTTGCATTCCGT
                      ____________________________________________________________
consensus             TTAGTCATTCAAAAGAAATATCGAGGATGGAAAGGGCGGAAGGACTTCCTTGCATTCCGT
 
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rJMSF040L03+          CGGAAAGTAGTGAAGATACAGGCTCATGTACGAGGCTATCAGGTTAGAAAGGAATATAAG
rJMSF045G19+                                                            GGAATATAAG
                      ____________________________________________________________
consensus             CGGAAAGTAGTGAAGATACAGGCTCATGTACGAGGCTATCAGGTTAGAAAGGAATATAAG
 
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rJMSF040L03+          GTATGTTGGGCTACCGGGATTCTAGAGAAGGTAGTACTGAGGTGGCGCNGGCGGGGAGTT
rJMSF045G19+          GTATGTTGGGCTACCGGGATTCTAGAGAAGGTAGTACTGAGGTGGCGCAGGCGGGGAGTT
                      ____________________________________________________________
consensus             GTATGTTGGGCTACCGGGATTCTAGAGAAGGTAGTACTGAGGTGGCGCAGGCGGGGAGTT
 
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rJMSF040L03+          GGTCTCCGAGGATTCCATCTAGAGATCGATGAAAGTGAGGGTGAAGCCNTTNTGAGAGTA
rJMSF045G19+          GGTCTCCGAGGATTCCATCTAGAGATCGATGAAAGTGAGGGTGAAGCCNTTCTGAGAGTA
                      ____________________________________________________________
consensus             GGTCTCCGAGGATTCCATCTAGAGATCGATGAAAGTGAGGGTGAAGCCNTTCTGAGAGTA
 
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rJMSF040L03+          TTTCGCAAGCNGAAAGTGGATGCTGCCNTTGATGAGGCNGTCTCCAGGGTTCTCTCCNTG
rJMSF045G19+          TTTCGCAAGCAGAAAGTGGATGCTGCCNTTGATGAGGCAGTCTCCNGGGTTCTCTCCATG
                      ____________________________________________________________
consensus             TTTCGCAAGCAGAAAGTGGATGCTGCCNTTGATGAGGCAGTCTCCAGGGTTCTCTCCATG
 
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rJMSF040L03+          GTTGAATCTCAAGAGGCACGTAATCAGTACCGTCGCNTTCTTGAAAAATACCGACAAGCT
rJMSF045G19+          GTTGAATCTCAAGAGGCACGTAATCAGTACCGTCGCNTTCTTGAAAAATACCGACAAGCT
                      ____________________________________________________________
consensus             GTTGAATCTCAAGAGGCACGTAATCAGTACCGTCGCNTTCTTGAAAAATACCGACAAGCT
 
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rJMSF040L03+          AAGGCTAAGCTTCAAAGTGCGGAAACTGACGCAAAAACTTCTCATGACAGCATGTCTAAT
rJMSF045G19+          AAGGCTAAGCTTCAAAGTGCGGAAACTGACGCAAAAACTTCTCATGACAGCATGTNTAAT
                      ____________________________________________________________
consensus             AAGGCTAAGCTTCAAAGTGCGGAAACTGACGCAAAAACTTCTCATGACAGCATGTCTAAT
 
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rJMSF040L03+          ATGGAAAATGATGACTTATAGCAGTTTTTACTGAGTTGCGTATNTGCAGATTCTTCCATA
rJMSF045G19+          ATGGAAAATGATGACTTATAGCAGTTTTTACTGAGTTGCGTATNTGCAGATTNTTCCATA
                      ____________________________________________________________
consensus             ATGGAAAATGATGACTTATAGCAGTTTTTACTGAGTTGCGTATNTGCAGATTCTTCCATA
 
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rJMSF040L03+          CCGAGTTCGTTCATTCNCNATAGGAACNCTCGATCTGGTGAGCTATCTTGTATATATGTG
rJMSF045G19+          CCGAGTTCGTTCATTCNCNATAGGAACNCTCGATCTGGTGAGCTATCTTGTATATATGTG
                      ____________________________________________________________
consensus             CCGAGTTCGTTCATTCNCNATAGGAACNCTCGATCTGGTGAGCTATCTTGTATATATGTG
 
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rJMSF040L03+          GATTGGCTTTTGATTTTTTGGAATTTGAGTGTGCTGTTTATGTCTGATGGTATAACTAGC
rJMSF045G19+          GATTGGCTTTTGATTTTTTGGAATTTGAGTGTGCTGTTTATGTCTGATGGTATAACTAGC
                      ____________________________________________________________
consensus             GATTGGCTTTTGATTTTTTGGAATTTGAGTGTGCTGTTTATGTCTGATGGTATAACTAGC
 
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rJMSF040L03+          TTTGAAAAAAAAAAATTTATATATAGATGTAGTGCCCGTAAACAATGGGAGTTCGTTCTA
rJMSF045G19+          TTTGAAAAAAAAAAATTTATATATAGATGTAGTGCCCGTAAACAATGGGAGTTCGTTCTA
                      ____________________________________________________________
consensus             TTTGAAAAAAAAAAATTTATATATAGATGTAGTGCCCGTAAACAATGGGAGTTCGTTCTA
 
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rJMSF040L03+          TTGTACATATTCTCAATTCTAGATTCACTTGGTACCAAATGTTATTCAA           
rJMSF045G19+          TTGTACATATTCTCAATTCTAGATTCACTTGGTACCAAATGTTATTCAACTGTTGGCCTT
                      ____________________________________________________________
consensus             TTGTACATATTCTCAATTCTAGATTCACTTGGTACCAAATGTTATTCAACTGTTGGCCTT