| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009H13 | Sequence | 411 | 002142 (7) | gb|AAV88066.1| | 8e-08 | NBS-LRR protein [Ipomoea batatas] | 803 | 001470 (3) | ref|XP_009764014.1| | 5e-17 | PREDICTED: putative late blight resistance protein homolog R1A-3 isoform X2 [Ni |
| JMSF012G12 | Sequence | 436 | 002142 (7) | gb|AAV88066.1| | 1e-07 | NBS-LRR protein [Ipomoea batatas] | 681 | 001470 (3) | gb|AAF09256.1|AF202179_1 | 2e-11 | disease resistance protein BS2 [Capsicum chacoense] |
| JMSF045G07 | Sequence | 767 | 002142 (7) | gb|AAV88066.1| | 2e-18 | NBS-LRR protein [Ipomoea batatas] | 780 | 001470 (3) | gb|AAF09256.1|AF202179_1 | 4e-18 | disease resistance protein BS2 [Capsicum chacoense] |
This contig is upended
. : . : . : . : . : . :
rJMSF009H13+ TTGCAAGTTGCCTAGATNGGAGGTGCTCAAGTTAAGAGCTGCATGTGTAGGCGAG
rJMSF045G07+ GTTCTTTGCAAGTTGCCTAGATTGGAGGTGCTCAAGTTAAGAGCTGCATGTGTAGGCGAG
____________________________________________________________
consensus GTTCTTTGCAAGTTGCCTAGATTGGAGGTGCTCAAGTTAAGAGCTGCATGTGTAGGCGAG
. : . : . : . : . : . :
rJMSF009H13+ GAGTGGGAGCTACTAGAGGATGACATATTCTGCGAGTTAATGGTTTTGGAAATTGGTCCA
rJMSF012G12+ A
rJMSF045G07+ GAGTGGGAGCTACTAGAGGATGACATATTCTGCGAGTTAATGGTTTTGGAAATTGGTCCA
____________________________________________________________
consensus GAGTGGGAGCTACTAGAGGATGACATATTCTGCGAGTTAATGGTTTTGGAAATTGGTCCA
. : . : . : . : . : . :
rJMSF009H13+ ACTTATCTCAAGGATTGGAAAGCCACTAGTGATCATTTTCCAAAACTTGAGCACATTTCT
rJMSF012G12+ ACTTATCTCAAGGATTGGAAAGCCACTAGTGATCATTTTCCAAAACTTGAGCACATTTCT
rJMSF045G07+ ACTTATCTCAAGGATTGGAAAGCCACTAGTGATCATTTTCCAAAACTTGAGCACATTTCT
____________________________________________________________
consensus ACTTATCTCAAGGATTGGAAAGCCACTAGTGATCATTTTCCAAAACTTGAGCACATTTCT
. : . : . : . : . : . :
rJMSF009H13+ CTTTTTTCATGCAAGAAATTGAAAGAGATCCCTAGCGGGTTTGCAGAAATTGAAAGATTG
rJMSF012G12+ CTTTTTTCATGCAAGAAATTGAAAGAGATCCCTAGCGGGTTTGCAGAAATTGAAAGATTG
rJMSF045G07+ CTTTTTTCATGCAAGAAATTGAAAGAGATCCCTAGCGGGTTTGCAGAAATTGAAAGATTG
____________________________________________________________
consensus CTTTTTTCATGCAAGAAATTGAAAGAGATCCCTAGCGGGTTTGCAGAAATTGAAAGATTG
. : . : . : . : . : . :
rJMSF009H13+ AAATCAATTCAATTAAGGGGCTGCCTTCCTTCTGTGGTGGCTTCAGCCGAGGAAATCAAA
rJMSF012G12+ NAATCAATTCAANTAAGGGGNTGCCTTCCTTCTGTGGTGGCTTCAGCCGAGGAAATCAAA
rJMSF045G07+ AAATCAATTCAATTAAGGGGCTGCCTTCCTTCTGTGGTGGCTTCAGCCGAGGAAATCAAA
____________________________________________________________
consensus AAATCAATTCAATTAAGGGGCTGCCTTCCTTCTGTGGTGGCTTCAGCCGAGGAAATCAAA
. : . : . : . : . : . :
rJMSF009H13+ GAAGAACAACTTGATTATTTGAATAATATTGTGGATGTTGTTTGTGGCTGAGCAACGTGG
rJMSF012G12+ GAAGAACAACTTGATTATTTGAATAATATTGTGGATGTTGTTTGTGGCTGAGCAACGTGG
rJMSF045G07+ GAAGAACAACTTGATTATTTGAATAATATTGTGGATGTTGTTTGTGGCTGAGCAACGTGG
____________________________________________________________
consensus GAAGAACAACTTGATTATTTGAATAATATTGTGGATGTTGTTTGTGGCTGAGCAACGTGG
. : . : . : . : . : . :
rJMSF009H13+ CTACTCTGATCTCCGGTTTCTGAGCTGAGTCTGATGAAGCTTAGTTTGATGAAAATGAGT
rJMSF012G12+ CTACTNTGATCTCCGGTTTCTGAGCTGAGTCTGATGAAGCTTAGTTNGATGAAAATGAGT
rJMSF045G07+ CTACTCTGATCTCCGGTTTCTGAGCTGAGTCTGATGAAGCTTAGTTTGATGAAAATGAGT
____________________________________________________________
consensus CTACTCTGATCTCCGGTTTCTGAGCTGAGTCTGATGAAGCTTAGTTTGATGAAAATGAGT
. : . : . : . : . : . :
rJMSF009H13+ TTTTCCAGAAGAGCAGAAGGAGGAAAGCTTGAGAAAAATTTGTAGCTAAGCACGTTTATC
rJMSF012G12+ TTTTCCAGAAGAGCAGAAGGAGGAAAGCTTGAGAAAAATTTGTAGCTAAGCACGTTTATC
rJMSF045G07+ TTTTCCAGAAGAGCAGAAGGAGGAAAGCTTGAGAAAAATTTGTAGCTAAGCACGTTTATC
____________________________________________________________
consensus TTTTCCAGAAGAGCAGAAGGAGGAAAGCTTGAGAAAAATTTGTAGCTAAGCACGTTTATC
. : . : . : . : . : . :
rJMSF009H13+ ATTGTGAATCATAAAATTTGACTTTGCAACATTGTACTGTGTATCTCTGAGTGAGAAAGC
rJMSF012G12+ ATTGTGAATCATAAAATTTGACTTTGCAACATTGTACTGTGTATCTCTGAGTGAGAAAGC
rJMSF045G07+ ATTGTGAATCATAAAATTTGACTTTGCAACATTGTACTGTGTATCTCTGAGTGAGAAAGC
____________________________________________________________
consensus ATTGTGAATCATAAAATTTGACTTTGCAACATTGTACTGTGTATCTCTGAGTGAGAAAGC
. : . : . : . : . : . :
rJMSF009H13+ GTTGCATCACTTTGTGCTTTAAAGCAGTGTTGCAAAAATCGGCGCCTAGGCTCTCTAGGC
rJMSF012G12+ GTTGCATCACTTTGTGCTTTAAAGCAGTGTTGCAAAAATCGGCGCCTAGGCTCTCTAGGC
rJMSF045G07+ GTTGCATCACTTTGTGCTTTAAAGCAGTGTTGCAAAAATCGGCGCCTAGGCTCTCTAGGC
____________________________________________________________
consensus GTTGCATCACTTTGTGCTTTAAAGCAGTGTTGCAAAAATCGGCGCCTAGGCTCTCTAGGC
. : . : . : . : . : . :
rJMSF009H13+ ATCGATTAATCGCTCTAGGCGCCCGCCTAGGCGCTCTAGGCAGTCCTCAGGCACCTAGCG
rJMSF012G12+ ATCGATTAATCGCTCTAGGCGCCCGCCTAGGCGCTCTAGGCAGTCCTCAGGCACCTAGCG
rJMSF045G07+ ATCGATTAATCGCTCTAGGCGCCCGCCTAGGCGCTCTAGGCAGTCCTCAGGCACCTAGCG
____________________________________________________________
consensus ATCGATTAATCGCTCTAGGCGCCCGCCTAGGCGCTCTAGGCAGTCCTCAGGCACCTAGCG
. : . : . : . : . : . :
rJMSF009H13+ ATTTTTTCAACCTTGCTTTAAAGTGACTTAGACTTGTCGTCCTTTGTTGTGCTTTTTGTT
rJMSF012G12+ ATTTTTTCAACCTTGCTTTAAAGTGACTTAGACTTGTCGTCCTAAGTTGTGCTTTTTGTT
rJMSF045G07+ ATTTTTTCAACCTTGCTTTAAAGTGACTTAGACTTGTCGTCCTTTGTTGTGCTTTTTGTT
____________________________________________________________
consensus ATTTTTTCAACCTTGCTTTAAAGTGACTTAGACTTGTCGTCCTTTGTTGTGCTTTTTGTT
. : . : . : . : . : . :
rJMSF009H13+ TTAAAACGTTTGTTTCTATTTCATTCATAAGGTCGGAAATC
rJMSF012G12+ TTAAAACGTTTGTTTCTATGTCATTCATAAGGTCGGAAATC
rJMSF045G07+ TTAAAACGTTTGTTTCTATTTCATTCATAAGGTCGGAAATCCATGTGATATGCTGAAGTT
____________________________________________________________
consensus TTAAAACGTTTGTTTCTATTTCATTCATAAGGTCGGAAATCCATGTGATATGCTGAAGTT