Contig 001468:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040K11+                                                          CTCACAGCCGCA
                      ____________________________________________________________
consensus                                                             CTCACAGCCGCA
 
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rJMSF040K11+          ACATCCAGCAGTCAGGTCGAAGTGGCTGCATATCTTCTCCCTCATGTACCTCAGCCAGTT
                      ____________________________________________________________
consensus             ACATCCAGCAGTCAGGTCGAAGTGGCTGCATATCTTCTCCCTCATGTACCTCAGCCAGTT
 
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rJMSF040K11+          CTTGCTGCTCTTAGTATTGAGATTCTCAAGGCAGCTGGTGAACGGAGTGGTGGATCTCTT
                      ____________________________________________________________
consensus             CTTGCTGCTCTTAGTATTGAGATTCTCAAGGCAGCTGGTGAACGGAGTGGTGGATCTCTT
 
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rJMSF040K11+          GATGGTGTAGCTTTTCTTCTTCACTCAGACTTCCTTGGTGATCCTGTGGCTACTTATGCT
rJMFF026H04+                                             TGGTGATCCTGTGGCTACTTATGCT
                      ____________________________________________________________
consensus             GATGGTGTAGCTTTTCTTCTTCACTCAGACTTCCTTGGTGATCCTGTGGCTACTTATGCT
 
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rJMSF040K11+          GTCGCAGACAGCATAGCTAGGTCTGATGATGAGGCCGTCACTCCTGAGCTCAGGGCTTTT
rJMFF026H04+          GTCGCAGACAGCATAGCTAGGTCTGATGATGAGGCCGTCACTCCTGAGCTCAGGGCTTTT
                      ____________________________________________________________
consensus             GTCGCAGACAGCATAGCTAGGTCTGATGATGAGGCCGTCACTCCTGAGCTCAGGGCTTTT
 
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rJMSF040K11+          CTTCAGGAGCACTGGTCGGAGGCAGCCTTTTTAGATGGACTGGAGCAGGGACAAGAACAT
rJMFF026H04+          CTTCAGGAGCACTGGTCGGAGGCAGCCTTTTTAGATGGACTGGAGCAGGGACAAGAACAT
                      ____________________________________________________________
consensus             CTTCAGGAGCACTGGTCGGAGGCAGCCTTTTTAGATGGACTGGAGCAGGGACAAGAACAT
 
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rJMSF040K11+          TACTTGAACATGGTGCGAATTATGAAATGGGGTGAATCTCCAATCCGTTTGTCGGATCTT
rJMFF026H04+          TACTTGAACATGGTGCGAATTATGAAATGGGGTGAATCTCCAATCCGTTTGTCGGATCTT
rJMSF044L18+                                                   AATCCGTTTGTCGGATCTT
                      ____________________________________________________________
consensus             TACTTGAACATGGTGCGAATTATGAAATGGGGTGAATCTCCAATCCGTTTGTCGGATCTT
 
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rJMSF040K11+          CCAGCTCCCCTGAGGGTTGCGATAGCATACCTGCCACTGTATAGGGAATGTATCAAGGTG
rJMFF026H04+          CCAGCTCCCCTGAGGGTTGCGATAGCATACCTGCCACTGTATAGGGAATGTATCAAGGTG
rJMSF044L18+          CCAGCTCCCNTGAGGGTTGCGATAGCATACCTGCCACTGTATAGGGAATGTATCAAGGTG
                      ____________________________________________________________
consensus             CCAGCTCCCCTGAGGGTTGCGATAGCATACCTGCCACTGTATAGGGAATGTATCAAGGTG
 
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rJMSF040K11+          GGAGGTTGCTTGCTATCACAAAGGCACAGGGGACAGCTAGTGGGAGCTGCAAAAAGACTC
rJMFF026H04+          GGAGGTTGCTTGCTATCACAAAGGCACAGGGGACAGCTAGTGGGAGCTGCAAAAAGACTC
rJMSF044L18+          GGAGGTTGCTTGCTATCACAAAGGCACAGGGGACAGCTAGTGGGAGCTGCAAAAAGACTC
                      ____________________________________________________________
consensus             GGAGGTTGCTTGCTATCACAAAGGCACAGGGGACAGCTAGTGGGAGCTGCAAAAAGACTC
 
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rJMSF040K11+          AGTGGTGTCATGCTCATCGAGGCAAACCATGGAAGAGAGTTACTGGCTGTCTTGGAGCAT
rJMFF026H04+          AGTGGTGTCATGCTCATCGAGGCAAACCATGGAAGAGAGTTACTGGCTGTCTTGGAGCAT
rJMSF044L18+          AGTGGTGTCATGCTCATCGAGGCAAACCATGGAAGAGAGTTACTGGCTGTCTTGGAGCAT
                      ____________________________________________________________
consensus             AGTGGTGTCATGCTCATCGAGGCAAACCATGGAAGAGAGTTACTGGCTGTCTTGGAGCAT
 
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rJMSF040K11+          CATCTTCCTCCATTTTTGTTATATGCATCAAGCTTTGGGTAGAAAGATAGTAGTACTTGC
rJMFF026H04+          CATCTTCCTCCATTTTTGTTATATGCATCAAGCTTTGGGTAGAAAGATAGTAGTACTTGC
rJMSF044L18+          CATCTTCCTCCATTTTTGTTATATGCATCAAGCTTTGGGTAGAAAGATAGTAGTACTTGC
                      ____________________________________________________________
consensus             CATCTTCCTCCATTTTTGTTATATGCATCAAGCTTTGGGTAGAAAGATAGTAGTACTTGC
 
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rJMSF040K11+          AAGAGTTCAAGTTTATGATCGAATCGAAGCATAATAATACAGTAGCTGGGGGCGACTTTG
rJMFF026H04+          AAGAGTTCAAGTTTATGATCGAATCGAAGCATAATAATACAGTAGCTGGGGGCGACTTTG
rJMSF044L18+          AAGAGTTCAAGTTTATGATCGAATCGAAGCATAATAATACAGTAGCTGGGGGCGACTTTG
                      ____________________________________________________________
consensus             AAGAGTTCAAGTTTATGATCGAATCGAAGCATAATAATACAGTAGCTGGGGGCGACTTTG
 
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rJMSF040K11+          ATGAATCCTCAATATCTGTCAATTTTCTCACAACATAGTCGGGTTGGGTAACTTGTTTTT
rJMFF026H04+          ATGAATCCTCAATATCTGTCAATTTTCTCACAACATAGTCGGGTTGGGTAACTTGTTTTT
rJMSF044L18+          ATGAATCCTCAATATCTGTCAATTTTCTCACAACATAGTCGGGTTGGGTAACTTGTTTTT
                      ____________________________________________________________
consensus             ATGAATCCTCAATATCTGTCAATTTTCTCACAACATAGTCGGGTTGGGTAACTTGTTTTT
 
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rJMSF040K11+          TGGTTTAACGAAACTGAGGTGAGGTTTAGTGCATACCTTGCTGTGCACAGCACCTCTAAA
rJMFF026H04+          TGGTTTAACGAAACTGAGGTGAGGTTTAGTGCATACCTTGCTGTGCACAGCACCTCTAAA
rJMSF044L18+          TGGTTTAACGAAACTGAGGTGAGGTTTAGTGCATACCTTGCTGTGCACAGCACCTCTAAA
                      ____________________________________________________________
consensus             TGGTTTAACGAAACTGAGGTGAGGTTTAGTGCATACCTTGCTGTGCACAGCACCTCTAAA
 
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rJMSF040K11+          CTATCCAAGAAAGAAGAATACTAGAGTCAGGAGAAGTTGATACTGCAACCCATCATGTAA
rJMFF026H04+          CTATCCAAGAAAGAAGAATACTAGAGTCAGGAGAAGTTGATACTGCAACCCATCATGTAA
rJMSF044L18+          CTATCCAAGAAAGAAGAATACTAGAGTCAGGAGAAGTTGATACTGCAACCCATCATGTAA
                      ____________________________________________________________
consensus             CTATCCAAGAAAGAAGAATACTAGAGTCAGGAGAAGTTGATACTGCAACCCATCATGTAA
 
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rJMSF040K11+          AATAGGTACTTT                                                
rJMFF026H04+          AATAGGTACTTTTGTGGCAGTTATTTTCCTATTGATGATGATGCTGGTATACTGAAAAGT
rJMSF044L18+          AATAGGTACTTTTGTGGCAGTTATTTTCCTATTGATGATGATGCTGGTATACTGAAAAGT
                      ____________________________________________________________
consensus             AATAGGTACTTTTGTGGCAGTTATTTTCCTATTGATGATGATGCTGGTATACTGAAAAGT
 
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rJMSF044L18+          GCTATTATCTTCCCCTGAATCATTGTGTGTATATATTATCAATCCTCATCCTATTTTAGT
                      ____________________________________________________________
consensus             GCTATTATCTTCCCCTGAATCATTGTGTGTATATATTATCAATCCTCATCCTATTTTAGT
 
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rJMSF044L18+          TTTATTGTATAGTAGTGTGGGTTGAGATGCAGTCATGAATGAAATGCCCCTGCCCCTATG
                      ____________________________________________________________
consensus             TTTATTGTATAGTAGTGTGGGTTGAGATGCAGTCATGAATGAAATGCCCCTGCCCCTATG
 
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rJMSF044L18+          GTGGCCCTGCCTTCTCACGTGCATTTCAATGTTTCATGCTTGTGTAANCATGACCATGTT
                      ____________________________________________________________
consensus             GTGGCCCTGCCTTCTCACGTGCATTTCAATGTTTCATGCTTGTGTAANCATGACCATGTT