Contig 001467:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044L02Sequence313003861 (5)187001467 (2)
JMSF050B01Sequence640003861 (5)ref|XP_009613914.1|230PREDICTED: uncharacterized protein LOC104106953 [Nicotiana tomentosiformis] ref|757001467 (2)ref|XP_009792413.1|317PREDICTED: uncharacterized protein LOC104239475 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF050B01+                                                      TTACTTGCTGGCACAC
                      ____________________________________________________________
consensus                                                         TTACTTGCTGGCACAC
 
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rJMSF050B01+          CGTCCAAACATGCTGGGATTAAGAAATACACGATAATGTCGCCTTTTGAGCCACACCAGC
                      ____________________________________________________________
consensus             CGTCCAAACATGCTGGGATTAAGAAATACACGATAATGTCGCCTTTTGAGCCACACCAGC
 
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rJMSF050B01+          TAGCCCGTTCAGCGGCCANCCTTGAGATGGAGCTCAGGAATTGGAGAGCCTGTTTCGAGT
                      ____________________________________________________________
consensus             TAGCCCGTTCAGCGGCCANCCTTGAGATGGAGCTCAGGAATTGGAGAGCCTGTTTCGAGT
 
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rJMSF050B01+          CATGGATCACTTCTCAGCGATCCTACTTGCACTCATTAACAGGGTGGCTCTTACGTTGTC
                      ____________________________________________________________
consensus             CATGGATCACTTCTCAGCGATCCTACTTGCACTCATTAACAGGGTGGCTCTTACGTTGTC
 
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rJMSF050B01+          TCCACGAGGACAACCCTGCAGACACGTCGTCAAAAACGCCATGCTCTCCTCCCCGCAGCA
                      ____________________________________________________________
consensus             TCCACGAGGACAACCCTGCAGACACGTCGTCAAAAACGCCATGCTCTCCTCCCCGCAGCA
 
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rJMSF050B01+          GGACTGAGGGAGCACCGCCAATATTCAACATATGCATCCAGTGGTCTAAGCTCTTGGACT
                      ____________________________________________________________
consensus             GGACTGAGGGAGCACCGCCAATATTCAACATATGCATCCAGTGGTCTAAGCTCTTGGACT
 
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rJMSF050B01+          CGGTGAGGGAGCTCCCCGTGCTCGATGGACTAGACTTTTTCGCTGCAGGCGTTGGTTCCC
                      ____________________________________________________________
consensus             CGGTGAGGGAGCTCCCCGTGCTCGATGGACTAGACTTTTTCGCTGCAGGCGTTGGTTCCC
 
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rJMSF050B01+          TATATGCACACCAGCTGAAAGAAGACTCACGGGGGCGGATGAATCCAGGCGGGTCAAAGA
                      ____________________________________________________________
consensus             TATATGCACACCAGCTGAAAGAAGACTCACGGGGGCGGATGAATCCAGGCGGGTCAAAGA
 
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rJMSF050B01+          GGTTTAGCGGGGAGCCCTCGACTAATAACATGGAGCTGGTAGAAGTCGGGAAAGTAGACG
                      ____________________________________________________________
consensus             GGTTTAGCGGGGAGCCCTCGACTAATAACATGGAGCTGGTAGAAGTCGGGAAAGTAGACG
 
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rJMSF050B01+          AGGAAGTAATGACAGCAGAGAAGATGGCTGAGGTGGCAATTAGAGTGCTGTGTGCTGGGA
                      ____________________________________________________________
consensus             AGGAAGTAATGACAGCAGAGAAGATGGCTGAGGTGGCAATTAGAGTGCTGTGTGCTGGGA
 
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rJMSF050B01+          TGTCAGTCTCTGTGAGCTCACTGACAGAATTCTCAATTGTTTCAGCTGAAGGATATGCTG
rJMSF044L02+                                                               TATGCTG
                      ____________________________________________________________
consensus             TGTCAGTCTCTGTGAGCTCACTGACAGAATTCTCAATTGTTTCAGCTGAAGGATATGCTG
 
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rJMSF050B01+          ATTTGCTCAAGAACTGGGAGGAGAAAAGGCTGCTGCAAAACTCCAATAGAAATGGAAATG
rJMSF044L02+          ATTTGCTCAAGAACTGGGAGGAGAAAAGGCTGCCNCAAAACTCCAATAGAAATGGNAATG
                      ____________________________________________________________
consensus             ATTTGCTCAAGAACTGGGAGGAGAAAAGGCTGCTGCAAAACTCCAATAGAAATGGAAATG
 
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rJMSF050B01+          GAAATGGAATGTAGTTAGTTTATGCTATAATAGGGTAGTTAGGATGGAAATTAGATCTAT
rJMSF044L02+          GAAATGGAATGTAGTTACTCTATGCTATAATAGGGTAGTTAGGATGGAAATTAGATCTAT
                      ____________________________________________________________
consensus             GAAATGGAATGTAGTTAGTTTATGCTATAATAGGGTAGTTAGGATGGAAATTAGATCTAT
 
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rJMSF050B01+          CCAGTGTAAATTA                                               
rJMSF044L02+          CCAGTGTAAATTATCTTGTGTTTGATTTAGTGTNTATCATACAGATCAGAGAATGAAATG
                      ____________________________________________________________
consensus             CCAGTGTAAATTATCTTGTGTTTGATTTAGTGTNTATCATACAGATCAGAGAATGAAATG