Contig 001465:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031A10+                                                          TTCTTCCGATCT
                      ____________________________________________________________
consensus                                                             TTCTTCCGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-                          TAGCCCAACGTCTCAAACATTGGGGAAACATTCTCGAGAAGAGCC
rJMSF031A10+          CTCAGCCCAATGCAGTAGCCCAACGTCTCAAACATTGGGGAAACATTCTCGAGAAGAGCC
                      ____________________________________________________________
consensus             CTCAGCCCAATGCAGTAGCCCAACGTCTCAAACATTGGGGAAACATTCTCGAGAAGAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           TCTGGGGACGAGTAGTGTCCTAATTCCTAAGGCTCTTCGAATTGATGACTCGAGCGAAGC
rJMSF031A10+          TCTGGGGACGAGTAGTGTCCTAATTCCTAAGGCTCTTCGAATTGATGACTCGAGCGAAGC
rJMSF043M24+                                               CGAATTGATGACTCGAGCGAAGC
                      ____________________________________________________________
consensus             TCTGGGGACGAGTAGTGTCCTAATTCCTAAGGCTCTTCGAATTGATGACTCGAGCGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           AGCAAAGATCTCTATCTGGTCAACATTAGGAATCAAGAACGAAAAAACCGATTCACCGGG
rJMSF031A10+          AGCAAAGATCTCTATCTGGTCAACATTAGGAATCAAGAACGAAAAAACCGATTCACCGGG
rJMSF043M24+          AGCAAAGATCTCTATCTGGTCAACATTAGGAATCAAGAACGAAAAAACCGATTCACCGGG
                      ____________________________________________________________
consensus             AGCAAAGATCTCTATCTGGTCAACATTAGGAATCAAGAACGAAAAAACCGATTCACCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           AGCAAGTCTCCTGAAGGCCTTCAGCTCAAAAGCCGACGAGAAAAACCACGTGGCCGATCA
rJMSF031A10+          AGCAAGTCTCCTGAAGGCCTTCAGCTCAAAAGCCGACGAGAAAAACCACGTGGCCGATCA
rJMSF043M24+          AGCAAGTCTCCTGAAGGCCTTCAGCTCAAAAGCCGACGAGAAAAACCACGTGGCCGATCA
                      ____________________________________________________________
consensus             AGCAAGTCTCCTGAAGGCCTTCAGCTCAAAAGCCGACGAGAAAAACCACGTGGCCGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           TTCTTGGTTGATGAAAGCCAACCCTGCCGCTCTGTCTCGATCACTCAACTTCCACGAGAG
rJMSF031A10+          TTCTTGGTTGATGAAAGCCAACCCTGCCGCTCTGTCTCGATCACTCAACTTCCACGAGAG
rJMSF043M24+          TTCTTGGTTGATGAAAGCCAACCCTGCCGCTCTGTCTCGATCACTCAACTTCCACGAGAG
                      ____________________________________________________________
consensus             TTCTTGGTTGATGAAAGCCAACCCTGCCGCTCTGTCTCGATCACTCAACTTCCACGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           CACATAAACCGCTGAACCATCACAACTACCTCGATCTGCAACAAAAGAACATATGGATTC
rJMSF031A10+          CACATAAACCGCTGAACCATCACAACTACCTCGATCTGCAACAAAAGAACATATGGATTC
rJMSF043M24+          CACATAAACCGCTGAACCATCACAACTACCTCGATCTGCAACAAAAGAACATATGGATTC
                      ____________________________________________________________
consensus             CACATAAACCGCTGAACCATCACAACTACCTCGATCTGCAACAAAAGAACATATGGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           GGATCGTTTAAGGTAATGCAGCTGCCAGTGAAGTCATTTCATCACCGAGAATCGAGTATA
rJMSF031A10+          GGATCGTTTAAGGTAATGCAGCTGCCAGTGAAGTCATTTCATCACCGAGAATCGAGTATA
rJMSF043M24+          GGATCGTTTAAGGTAATGCAGCTGCCAGTGAAGTCATTTCATCACCGAGAATCGAGTATA
                      ____________________________________________________________
consensus             GGATCGTTTAAGGTAATGCAGCTGCCAGTGAAGTCATTTCATCACCGAGAATCGAGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           TATGTTGAGTAACACTCGCTAAGGGGAAGAGCTCTTACTAATCCTTTCGGTTAGTGACTT
rJMSF031A10+          TATGTTGAGTAACACTCGCTAAGGGGAAGAGCTCTTACTAATCCTTTCGGTTAGTGACTT
rJMSF043M24+          TATGTTGAGTAACACTCGCTAAGGGGAAGAGCTCTTACTAATCCTTTCGGTTAGTGACTT
                      ____________________________________________________________
consensus             TATGTTGAGTAACACTCGCTAAGGGGAAGAGCTCTTACTAATCCTTTCGGTTAGTGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           TTTTGTTTGCGTTTTGGCAGCGGTATGTGGAATGCTGCTTCAATTTCGATACGAGTATAT
rJMSF031A10+          TTTTGTTTGCGTTTTGGCAGCGGTATGTGGAATGCTGCTTCAATTTCGATACGAGTATAT
rJMSF043M24+          TTTTGTTTGCGTTTTGGCAGCGGTATGTGGAATGCTGCTTCAATTTCGATACGAGTATAT
                      ____________________________________________________________
consensus             TTTTGTTTGCGTTTTGGCAGCGGTATGTGGAATGCTGCTTCAATTTCGATACGAGTATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           ATAGTTTGTCAGTGTGTTTCATGTACATATATATACATATCTTTGACAGGCGACCAAATA
rJMSF031A10+          ATAGTTTGTCAGTGTGTTTCATGTACATATATATACATATCTTTGACAGGCGACCAAATA
rJMSF043M24+          ATAGTTTGTCAGTGTGTTTCATGTACATATATATACATATCTTTGACAGGCGACCAAATA
                      ____________________________________________________________
consensus             ATAGTTTGTCAGTGTGTTTCATGTACATATATATACATATCTTTGACAGGCGACCAAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007I18-           GACACAGAAATAAGAGAGAATCTTGATTGC                              
rJMSF031A10+          GACACAGAAATAAGAGAGAATCTTGATTGCACTAAAGCAAAGAAAAGTTTTTGCAGTCTG
rJMSF043M24+          GACACAGAAATAAGAGAGAATCTTGATTGCACTAAAGCAAAGAAAAGTTTTTGCAGTCTG
                      ____________________________________________________________
consensus             GACACAGAAATAAGAGAGAATCTTGATTGCACTAAAGCAAAGAAAAGTTTTTGCAGTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031A10+          TAAATGTAAATGTAGTATATCCTTGGCCTTGGTATCCTCTTTT                 
rJMSF043M24+          TAAATGTAAATGTAGTATATCCTTGGCCTTGGTATCCTCTTTTTTGTATCTTTTACTGAC
                      ____________________________________________________________
consensus             TAAATGTAAATGTAGTATATCCTTGGCCTTGGTATCCTCTTTTTTGTATCTTTTACTGAC