| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF036F06 | Sequence | 571 | 001462 (9) | ref|XP_009611505.1| | 4e-32 | PREDICTED: uncharacterized protein LOC104104985 isoform X1 [Nicotiana tomentosi | 737 | 001462 (9) | ref|XP_009799156.1| | 6e-75 | PREDICTED: uncharacterized protein LOC104245264 isoform X1 [Nicotiana sylvestri |
| JMSF018K21 | Sequence | 230 | 001462 (9) | 757 | 001462 (9) | ref|XP_009799156.1| | 5e-74 | PREDICTED: uncharacterized protein LOC104245264 isoform X1 [Nicotiana sylvestri | |||
| JMSF030E06 | Sequence | 588 | 001462 (9) | ref|XP_009611506.1| | 2e-41 | PREDICTED: uncharacterized protein LOC104104985 isoform X2 [Nicotiana tomentosi | 774 | 001462 (9) | ref|XP_009799156.1| | 6e-74 | PREDICTED: uncharacterized protein LOC104245264 isoform X1 [Nicotiana sylvestri |
| JMSF041G04 | Sequence | 831 | 015829 | 611 | 001462 (9) | ref|XP_009799164.1| | 3e-41 | PREDICTED: uncharacterized protein LOC104245264 isoform X2 [Nicotiana sylvestri | |||
| JMSF043J07 | Sequence | 742 | 001462 (9) | ref|XP_009611506.1| | 4e-79 | PREDICTED: uncharacterized protein LOC104104985 isoform X2 [Nicotiana tomentosi | 745 | 001462 (9) | ref|XP_009799156.1| | 2e-65 | PREDICTED: uncharacterized protein LOC104245264 isoform X1 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
JMFF036F06- GC
____________________________________________________________
consensus GC
. : . : . : . : . : . :
JMFF036F06- GGTGGGCGCCATTCATTTCTCAAGAGCACAGAAAGTATCAGAAAGAGAGGTCGATCATGG
JMSF030E06- AAGAGCACAGAAAGTATCAGAAAGAGAGGTCGATCATGG
JMSF018K21- AGAGCACAGAAAGTATCAGAAAGAGAGGTCGATCATGG
JMSF043J07- AAGAGCACAGAAAGTATCAGAAAGAGAGGTCGATCATGG
____________________________________________________________
consensus GGTGGGCGCCATTCATTTCTCAAGAGCACAGAAAGTATCAGAAAGAGAGGTCGATCATGG
. : . : . : . : . : . :
JMFF036F06- CGATTTCGCTCAACTCTGTCGTGAGCTTGAATTCATCCCTGCAGGCAAACTACCAGCGTG
JMSF030E06- CGATTTCGCTCAACTCTGTCGTGAGCTTGAATTCATCC------GCAAACTACCAGCGTG
JMSF018K21- CGATTTCGCTCAACTCTGTCGTGAGCTTGAATTCATCC------GCAAACTACCAGCGTG
JMSF043J07- CGATTTCGCTCAACTCTGTCGTGAGCTTGAATTCATCC------GCAAACTACCAGCGTG
____________________________________________________________
consensus CGATTTCGCTCAACTCTGTCGTGAGCTTGAATTCATCC------GCAAACTACCAGCGTG
. : . : . : . : . : . :
JMFF036F06- CATCAAAGGGAATCTCTGTGCAGAAGGCTCTCCAGTTGGCTTGTCCCTCACAGAAGGTGT
JMSF030E06- CATCAAAGGGAATCTCTGTGCAGAAGGCTCTCCAGTTGGCTTGTCCCTCACAGAAGGTGT
JMSF018K21- CATCAAAGGGAATCTCTGTGCAGAAGGCTCTCCAGTTGGCTTGTCCCTCACAGAAGGTGT
JMSF043J07- CATCAAAGGGAATCTCTGTGCAGAAGGCTCTCCAGTTGGCTTGTCCCTCACAGAAGGTGT
____________________________________________________________
consensus CATCAAAGGGAATCTCTGTGCAGAAGGCTCTCCAGTTGGCTTGTCCCTCACAGAAGGTGT
. : . : . : . : . : . :
JMFF036F06- GGCTACGCAGGGATGTAAAGGAGACAAAGTGGAGTTTCAATCTCTTAGTTGCAAATACCG
JMSF030E06- GGTTACGCAGGGATGTAAAGGAGACAAAGTGGAGTTTCAATCTCTTAGTTGCAAATACCG
JMSF018K21- GGTTACGCAGGGATGTAAAGGAGACAAAGTGGAGTTTCAATCTCTTAGTTGCAAATACCG
JMSF043J07- GGTTACGCAGGGATGTAAAGGAGACAAAGTGGAGTTTCAATCTCTTAGTTGCAAATACCG
rJMSF030E06+ AAATACCG
____________________________________________________________
consensus GGTTACGCAGGGATGTAAAGGAGACAAAGTGGAGTTTCAATCTCTTAGTTGCAAATACCG
. : . : . : . : . : . :
JMFF036F06- ATCGTGTTGAGACTGAGAGCTTAAATTCCTCTGTGGAGAATCCTTCACCGTCTGAGTCTT
JMSF030E06- ATCGTGTTGAGACTGAGAGCTTAAATTCCTCTGTGGAGAATCCTTCACCGTCTGAGTCTT
JMSF018K21- ATCGTGTTGAGACTGA
JMSF043J07- ATCGTGTTGAGACTGAGAGCTTAAATTCCTCTGTGGAGAATCCTTCACCGTCTGAGTCTT
rJMSF030E06+ ATCGTGTTGAGACTGAGAGCTT-AATTCCTCTGTGGAGAATCCTTCACCGTCTGAGTCTT
rJMFF036F06+ TT
____________________________________________________________
consensus ATCGTGTTGAGACTGAGAGCTTAAATTCCTCTGTGGAGAATCCTTCACCGTCTGAGTCTT
. : . : . : . : . : . :
JMFF036F06- CAAGAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
JMSF030E06- CAAGAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
JMSF043J07- CAATAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
rJMSF030E06+ CAAGAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
rJMFF036F06+ CAAGAATCGAGACTGAAGATCAACNTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
rJMSF018K21+ AAGAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
____________________________________________________________
consensus CAAGAATCGAGACTGAAGATCAACCTAGTGCTCAAGCTGATTCAGCTCCGGAAGGATCTG
. : . : . : . : . : . :
JMFF036F06- ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
JMSF030E06- ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
JMSF043J07- ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
rJMSF030E06+ ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
rJMFF036F06+ ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
rJMSF018K21+ ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
rJMSF043J07+ AAAGAGGATGCGTCTTCTGTAACTA
____________________________________________________________
consensus ATGGTTCCAATGGATTACTAACTTCCAAAAACTTGAAAGAGGATGCGTCTTCTGTAACTA
. : . : . : . : . : . :
JMFF036F06- CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
JMSF030E06- CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
JMSF043J07- CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
rJMSF030E06+ CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
rJMFF036F06+ CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
rJMSF018K21+ CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
rJMSF043J07+ CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
____________________________________________________________
consensus CAAAGCCAGCCTTGAAAAGGTCTCCATTGACAGCTAGAGAAAAACTTAGGGCGGCTCGTG
. : . : . : . : . : . :
JMFF036F06- TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
JMSF030E06- TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
JMSF043J07- TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
rJMSF030E06+ TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
rJMFF036F06+ TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
rJMSF018K21+ TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
rJMSF041G04+ AAAGCAGCCTCTAAACCAGATAT-GGAAGCAAAC
rJMSF043J07+ TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
____________________________________________________________
consensus TTCTTAGCCGTTACAATAATGAATCAAAAGCAGCCTCTAAACCAGATATGGGAAGCAAAC
. : . : . : . : . : . :
JMFF036F06- TACTTGAGGTTTTACGTGAGTCTGAAAAG
JMSF030E06- TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
JMSF043J07- TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
rJMSF030E06+ TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
rJMFF036F06+ TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
rJMSF018K21+ TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
rJMSF041G04+ TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
rJMSF043J07+ TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
____________________________________________________________
consensus TACTTGAGGTTTTACGTGAGTCTGAAAAGGGTAAAAAAGGCCTTCCAGAGGCACCTAATA
. : . : . : . : . : . :
JMSF030E06- ATCTATTTGATGAT
JMSF043J07- ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
rJMSF030E06+ ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
rJMFF036F06+ ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
rJMSF018K21+ ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
rJMSF041G04+ ATCTATTTGATGGTAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
rJMSF043J07+ ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
____________________________________________________________
consensus ATCTATTTGATGATAGCAAAAGAGGGCTTCCAAAACCGGGCTGGACTTTCGAGCTTCCAG
. : . : . : . : . : . :
JMSF043J07- TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
rJMSF030E06+ TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
rJMFF036F06+ TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
rJMSF018K21+ TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
rJMSF041G04+ TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
rJMSF043J07+ TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
____________________________________________________________
consensus TAGGATTTGACGTGTTTCTCATTGCATTTTCATTTGTATTTATCAGCACAGTAATGTTCG
. : . : . : . : . : . :
JMSF043J07- CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGT
rJMSF030E06+ CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
rJMFF036F06+ CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
rJMSF018K21+ CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
rJMSF041G04+ CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
rJMSF043J07+ CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
____________________________________________________________
consensus CCACAACATACATTGTGTGGAAAGTTGGTGCCATACATTTCAATGAGTATTAAGGGTGGT
. : . : . : . : . : . :
rJMSF030E06+ CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
rJMFF036F06+ CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
rJMSF018K21+ CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
rJMSF041G04+ CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
rJMSF043J07+ CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
____________________________________________________________
consensus CTCACAGGTATCCTCTTTCCTTCTCCATTTTCTGGACAAGCAACCAAATTTTTGGTAGCA
. : . : . : . : . : . :
rJMSF030E06+ GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
rJMFF036F06+ GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
rJMSF018K21+ GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
rJMSF041G04+ GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
rJMSF043J07+ GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
____________________________________________________________
consensus GAATTTAGGCACTATCAATGCTTTTCTTCCCATCGCCAACTTTTGTGTCTTTACGAAGAA
. : . : . : . : . : . :
rJMSF030E06+ GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
rJMFF036F06+ GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
rJMSF018K21+ GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
rJMSF041G04+ GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
rJMSF043J07+ GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
____________________________________________________________
consensus GTACTTGAAGGAGCCCCGATTTTTAAGTCGGAAGAAGGCCTGGGTGGGGGTTTGGAGTAA
. : . : . : . : . : . :
rJMSF030E06+ GGAAGGGATGGAGATCGAGATAGGCAAGACATACATCAGTGTACAAA
rJMFF036F06+ GGAAGGGATGGAGATCGAGATAGGCAAGATATACATCAGTGTACAAAATGGATCCAAAAC
rJMSF018K21+ GGAAGTGATGGAGATCGAGATAGGCAAGACATACATCAGTGTACAAAATGGATCCAAAAC
rJMSF041G04+ GGAAGGGATGGAGATCGAGATAGGCAAGACATACATCAGTGTACAAAATGGATCCAAAAC
rJMSF043J07+ GGAAGGGATGGAGATCGAGATAGGCAAGACATACATCAGTGTACAAAATGGATCCAAAAC
____________________________________________________________
consensus GGAAGGGATGGAGATCGAGATAGGCAAGACATACATCAGTGTACAAAATGGATCCAAAAC
. : . : . : . : . : . :
rJMFF036F06+ TTATTAGTCAAAA
rJMSF018K21+ TTATTAGTCAAAATATTTTCATTTCTTGAATTCCTCTC
rJMSF041G04+ TTATTAGTCAAAATATTTTCATTTCTTGAATTCCTCTCTTTTCCTCTGTGTGATATGCAT
rJMSF043J07+ TTATTAGTCAAAATATTTTCATTTCTTGAATTCCTCTCTTTTCCTCTGTGTGATATGCAT
____________________________________________________________
consensus TTATTAGTCAAAATATTTTCATTTCTTGAATTCCTCTCTTTTCCTCTGTGTGATATGCAT
. : . : . : . : . : . :
rJMSF041G04+ AA-CGGAGTATTTATCTTTTTAACTCCATTT
rJMSF043J07+ AANCGGAGTATTTATCTTTTTAACTCCATTTTGAAGGAGTCGAATGTTTAGCAATACACT
____________________________________________________________
consensus AANCGGAGTATTTATCTTTTTAACTCCATTTTGAAGGAGTCGAATGTTTAGCAATACACT