Contig 001459:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF024C11+                                                               TTCTACA
                      ____________________________________________________________
consensus                                                                  TTCTACA
 
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rJMSF024C11+          ATTCCCCATNGAGAAAGATGTGTCTTTGATTTGTAATACAATTCGGTCTTGGCATATTGT
rJMSF042P14+                                                        TCTTGGCATATTGT
                      ____________________________________________________________
consensus             ATTCCCCATNGAGAAAGATGTGTCTTTGATTTGTAATACAATTCGGTCTTGGCATATTGT
 
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rJMSF024C11+          TGGACGTCTTGGTGGATGTAATTCAATGAATATGCAATTGTCACAGTCGCCTATGGACAA
rJMSF042P14+          TGGACGTCTTGGTGGATGTAATTCAATGAATATGCAATTGTCACAGTCGCCTATGGACAA
                      ____________________________________________________________
consensus             TGGACGTCTTGGTGGATGTAATTCAATGAATATGCAATTGTCACAGTCGCCTATGGACAA
 
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rJMSF024C11+          AAGACCAAGTTATGATGCAATTCAAGGGGCAAATGTAACACCAAGTACATTTTATAACAT
rJMSF042P14+          AAGACCAAGTTATGATGCAATTCAAGGGGCAAATGTAACACCAAGTACATTTTATAACAT
                      ____________________________________________________________
consensus             AAGACCAAGTTATGATGCAATTCAAGGGGCAAATGTAACACCAAGTACATTTTATAACAT
 
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rJMSF024C11+          AGGTGATCTTGAGATTCAAGATAATTTAGCTCGCATTTGGGTCGATATTGGGACGAGTGA
rJMSF042P14+          AGGTGATCTTGAGATTCAAGATAATTTAGCTCGCATTTGGGTCGATATTGGGACGAGTGA
                      ____________________________________________________________
consensus             AGGTGATCTTGAGATTCAAGATAATTTAGCTCGCATTTGGGTCGATATTGGGACGAGTGA
 
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rJMSF024C11+          ACCACTACTCTTGGATATACTAATCAATGCATTGACACAGATAAGTTCTGACTATATAGG
rJMSF042P14+          ACCACTACTCTTGGATATACTAATCAATGCATTGACACAGATAAGTTCTGACTATATAGG
                      ____________________________________________________________
consensus             ACCACTACTCTTGGATATACTAATCAATGCATTGACACAGATAAGTTCTGACTATATAGG
 
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rJMSF024C11+          AATTAAGCAAGTAGTATTTGGTGGATCTGAATTTGAGGGGTGGAAAGAGAACTTGAAATC
rJMSF042P14+          AATTAAGCAAGTAGTATTTGGTGGATCTGAATTTGAGGGGTGGAAAGAGAACTTGAAATC
                      ____________________________________________________________
consensus             AATTAAGCAAGTAGTATTTGGTGGATCTGAATTTGAGGGGTGGAAAGAGAACTTGAAATC
 
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rJMSF024C11+          GGAGGATTTGGGCTACAATGTACACAAGATTTAGCTGCCGGTGCAGAGTGCAGAATGGCA
rJMSF042P14+          GGAGGATTTGGGCTACAATGTACACAAGATTTAGCTGCCGGTGCAGAGTGCAGAATGGCA
                      ____________________________________________________________
consensus             GGAGGATTTGGGCTACAATGTACACAAGATTTAGCTGCCGGTGCAGAGTGCAGAATGGCA
 
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rJMSF024C11+          ACGTGCAGAGTGTCTAGCTGCCGGTTATTATAAAGTCCAGTTTGTTTCAAGAGATGCCAC
JMCP020F02-               GCAGAGTGTCTAGCTGCCGGTTATTATAAGGTCCAGTTTGTTTCAAGAGATGCCAC
rJMSF042P14+          ACGTGCAGAGTGTCTAGCTGCCGGTTATTATAAAGTCCAGTTTGTTTCAAGAGATGCCAC
                      ____________________________________________________________
consensus             ACGTGCAGAGTGTCTAGCTGCCGGTTATTATAAAGTCCAGTTTGTTTCAAGAGATGCCAC
 
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rJMSF024C11+          TGCAAGCATTATGTTCTAGATGGAGATATCTAAGCATCCTGATAGTCTACCTGATTTCAT
JMCP020F02-           TGCAAGCATTATGTTCTAGATGGAGATATCTAAGCATCCTGATAGTCTACCTGATTTCAT
rJMSF042P14+          TGCAAGCATTATGTTCTAGATGGAGATATCTAAGCATCCTGATAGTCTACCTGATTTCAT
                      ____________________________________________________________
consensus             TGCAAGCATTATGTTCTAGATGGAGATATCTAAGCATCCTGATAGTCTACCTGATTTCAT
 
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rJMSF024C11+          GAACTAGAACATTATGATCTTCTACATTTGTAACATGTACTATATTTGATTAGAGTCATC
JMCP020F02-           GAACTAGAACATTATGATCTTCCACATTTGTAACATGTACTATATTTGATTAGAGTCATC
rJMSF042P14+          GAACTAGAACATTATGATCTTCTACATTTGTAACATGTACTATATTTGATTAGAGTCATC
                      ____________________________________________________________
consensus             GAACTAGAACATTATGATCTTCTACATTTGTAACATGTACTATATTTGATTAGAGTCATC
 
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rJMSF024C11+          AGCTATTGCGCTAACTCAAAAAGTGTATAAAGTAGAGAATATTTTAGAACACCTGACTGT
JMCP020F02-           AGCTATTGCGCTAACTCAAAAAGTGTATAAAGTAGAGAATATTTTAGAACACCTGACTGT
rJMSF042P14+          AGCTATTGCGCTAACTCAAAAAGTGTATAAAGTAGAGAATATTTTAGAACACCTGACTGT
                      ____________________________________________________________
consensus             AGCTATTGCGCTAACTCAAAAAGTGTATAAAGTAGAGAATATTTTAGAACACCTGACTGT
 
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rJMSF024C11+          TAGCTAAGAATTTGTGTCTGGGGTGTCATTTCAATTGCTTCTGTAATCTTAGGC      
JMCP020F02-           TAGCTAAGAATTTGTGTCTGGGGTGTC                                 
rJMSF042P14+          TAGCTAAGAATTTGTGTCTGGGGTGTCATTTCAATTGCTTCTGTAATCTTAGGCATGCAT
                      ____________________________________________________________
consensus             TAGCTAAGAATTTGTGTCTGGGGTGTCATTTCAATTGCTTCTGTAATCTTAGGCATGCAT