Contig 001457:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017F20Sequence248019964669001457 (5)ref|XP_009613664.1|179PREDICTED: vesicle transport protein GOT1B-like [Nicotiana tomentosiformis] ref|
JMSF028C04Sequence649001457 (5)ref|XP_009798907.1|226PREDICTED: vesicle transport protein GOT1B-like [Nicotiana sylvestris]671001457 (5)ref|XP_009798907.1|226PREDICTED: vesicle transport protein GOT1B-like [Nicotiana sylvestris]
JMSF042B13Sequence553001457 (5)ref|XP_009798907.1|226PREDICTED: vesicle transport protein GOT1B-like [Nicotiana sylvestris]615001457 (5)ref|XP_009613664.1|176PREDICTED: vesicle transport protein GOT1B-like [Nicotiana tomentosiformis] ref|

Alignment

This contig is upended


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rJMSF028C04+                           GACGAAACCCCAAATTCCGCCATCACGAAGCATACCTGTTATA
                      ____________________________________________________________
consensus                              GACGAAACCCCAAATTCCGCCATCACGAAGCATACCTGTTATA
 
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JMSF028C04-                            ATCTGGATCCGCGAAAATGGTTTCCTTTGAGATGAACGATCGC
JMSF042B13-                            ATCTGGATCCGCGAAAATGGTTTCCTTTGAGATGAACGATCGC
rJMSF028C04+          CTTTGGGTTTTGTGGTGATCTGGATCCGCGAAAATGGTTTCCTTTGAGATGAACGATCGC
                      ____________________________________________________________
consensus             CTTTGGGTTTTGTGGTGATCTGGATCCGCGAAAATGGTTTCCTTTGAGATGAACGATCGC
 
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JMSF028C04-           AAAAAGATTGGGCTAGGGTTGACTGGATTTGGAGTATTTTTCTCATTCTTGGGAATCATT
JMSF042B13-           AAAAAGATTGGGCTAGGGTTGACTGGATTTGGAGTATTTTTCTCATTCTTGGGAATCATT
rJMSF028C04+          AAAAAGATTGGGCTAGGGTTGACTGGATTTGGAGTATTTTTCTCATTCTTGGGAATCATT
                      ____________________________________________________________
consensus             AAAAAGATTGGGCTAGGGTTGACTGGATTTGGAGTATTTTTCTCATTCTTGGGAATCATT
 
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JMSF028C04-           TTCTTCTTTGATAAGGGATTAATTGCCATGGGAAATATCCTCTTCTTCTCAGGGGTGGCC
JMSF042B13-           TTCTTCTTTGATAAGGGATTAATTGCCATGGGAAATATCCTCTTCTTCTCAGGGGTGGCC
rJMSF017F20+                                              ATCCTCTTCTTCTCAGGGGTGGCC
rJMSF028C04+          TTCTTCTTTGATAAGGGATTAATTGCCATGGGAAATATCCTCTTCTTCTCAGGGGTGGCC
rJMSF042B13+                                                       TTCTCAGGGGTGGCC
                      ____________________________________________________________
consensus             TTCTTCTTTGATAAGGGATTAATTGCCATGGGAAATATCCTCTTCTTCTCAGGGGTGGCC
 
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JMSF028C04-           TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
JMSF042B13-           TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
rJMSF017F20+          TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
rJMSF028C04+          TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
rJMSF042B13+          TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
                      ____________________________________________________________
consensus             TTAACCATTGGTCTTAAATCATCCATGCAGTTTTTCATGAAACGTACTAACTATAAGGGA
 
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JMSF028C04-           ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
JMSF042B13-           ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
rJMSF017F20+          ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
rJMSF028C04+          ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
rJMSF042B13+          ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
                      ____________________________________________________________
consensus             ACTATGTCATTTGGTGCAGGCTTTTTCCTGGTTGTTATTGGGTGGCCTATATTGGGGATG
 
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JMSF028C04-           ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTGGCAGTT
JMSF042B13-           ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTGGCAGTT
rJMSF017F20+          ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTTGCAGTT
rJMSF028C04+          ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTGGCAGTT
rJMSF042B13+          ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTGGCAGTT
                      ____________________________________________________________
consensus             ATTCTTGAAGCATATGGATTTATTATACTCTTCAGTGGGTTCTGGCCAACGTTGGCAGTT
 
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JMSF028C04-           TTCCTGCAGAAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
JMSF042B13-           TTCCTGCAGAAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
rJMSF017F20+          TTCCTGCAGGAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
rJMSF028C04+          TTCCTGCAGAAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
rJMSF042B13+          TTCCTGCAGAAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
                      ____________________________________________________________
consensus             TTCCTGCAGAAGATACCTATTCTTGGGTGGTTACTTCAACACCCCTTTGTCAGATCGATC
 
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JMSF028C04-           TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAATTTTAGTACAGAAATGTGCAAGGA
JMSF042B13-           TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAAT                       
rJMSF017F20+          TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAAT                       
rJMSF028C04+          TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAATTTTAGTACAGAAATGTGCAAGGA
rJMSF042B13+          TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAATTTTAGTACAGAAATGTGCAAGGA
                      ____________________________________________________________
consensus             TTTGACCGTTACAGGGGAAAACGTGTACCTGTATAATTTTAGTACAGAAATGTGCAAGGA
 
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JMSF028C04-           AGCAATACTTGTCGACCCTCTTGTAAGAATATGGAACTTGTTTCTAATCTCCAAGAAGAA
rJMSF028C04+          AGCAATACTTGTCGACCCTCTTGTAAGAATATGGAACTTGTTTCTAATCTCCAAGAAGAA
rJMSF042B13+          AGCAATACTTGTCGACCCTCTTGTAAGAATATGGAACTTGTTTCTAATCTCCAAGAAGAA
                      ____________________________________________________________
consensus             AGCAATACTTGTCGACCCTCTTGTAAGAATATGGAACTTGTTTCTAATCTCCAAGAAGAA
 
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JMSF028C04-           GCTTTCATCA                                                  
rJMSF028C04+          GCTTTCATCAGGAGACTAGAGCGCATAGTCTTTGGAATGTAATGTAAAATTCTTCGGCGC
rJMSF042B13+          GCTTTCATCAGGAGACTAGAGCGCATAGTCTTTGGAATGTAATGTAAAATTCTTCGGCGC
                      ____________________________________________________________
consensus             GCTTTCATCAGGAGACTAGAGCGCATAGTCTTTGGAATGTAATGTAAAATTCTTCGGCGC
 
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rJMSF028C04+          TTTTCAGGATGAACACAGAATTTTTT                                  
rJMSF042B13+          TTTTCAGGATGAACACAGAATTTTTTTTTGTTCACAGTTGATAATATGGGTTACTTAAGT
                      ____________________________________________________________
consensus             TTTTCAGGATGAACACAGAATTTTTTTTTGTTCACAGTTGATAATATGGGTTACTTAAGT
 
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rJMSF042B13+          GCCTTATTGCACCTCTTTTTGGCCTAAGCCTTTCTATTTGTGGATATTGTTCTTTTCTGG
                      ____________________________________________________________
consensus             GCCTTATTGCACCTCTTTTTGGCCTAAGCCTTTCTATTTGTGGATATTGTTCTTTTCTGG
 
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rJMSF042B13+          AGTGGAGGTGACAATTATGTTTCCACTAGGCTCTGTTTAGTATGTTAAATGTAATCTGGA
                      ____________________________________________________________
consensus             AGTGGAGGTGACAATTATGTTTCCACTAGGCTCTGTTTAGTATGTTAAATGTAATCTGGA