Contig 001456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020L19Sequence575000823 (40)ref|XP_008233807.1|1e-113PREDICTED: 40S ribosomal protein S4-1 [Prunus mume]748001456 (4)gb|KCW60005.1|6e-93hypothetical protein EUGRSUZ_H02737 [Eucalyptus grandis]
JMFF031F21Sequence629000823 (40)ref|XP_011084586.1|2e-128PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC715001456 (4)ref|XP_004148191.1|6e-90PREDICTED: 40S ribosomal protein S4-like [Cucumis sativus]
JMFF043E04Sequence646007473 (59)gb|KDP44363.1|3e-108hypothetical protein JCGZ_20043 [Jatropha curcas]599001456 (4)ref|XP_004148191.1|3e-54PREDICTED: 40S ribosomal protein S4-like [Cucumis sativus]
JMSF041N17Sequence768000823 (40)ref|XP_011084586.1|3e-145PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC802001456 (4)ref|XP_011084586.1|1e-113PREDICTED: 40S ribosomal protein S4 [Sesamum indicum] ref|XP_011095064.1| PREDIC

Alignment

This contig is upended


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rJMSF041N17+                                               ACCAGGTTGAAGTATGCCCTTAC
                      ____________________________________________________________
consensus                                                  ACCAGGTTGAAGTATGCCCTTAC
 
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rJMFF020L19+                                                                GTCAGG
rJMSF041N17+          CTATCGTGAAGTCATTTCAATTTTAATGCAGCGACATGTTTGGTTGATGGTAAGGTCAGG
                      ____________________________________________________________
consensus             CTATCGTGAAGTCATTTCAATTTTAATGCAGCGACATGTTTGGTTGATGGTAAGGTCAGG
 
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rJMFF020L19+          ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
rJMSF041N17+          ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
                      ____________________________________________________________
consensus             ACAGACAAGACTTACCCTGCTGGTTTCATGGATGTTATATCAATTCCAAAGACAAATGAG
 
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rJMFF020L19+          AACTTCCGCCTCCTTCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
rJMFF031F21+                        TCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
rJMSF041N17+          AACTTCCGCCTCC-TCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
                      ____________________________________________________________
consensus             AACTTCCGCCTCCTTCTATGATACCAAAGGGCGATTCCGACTTCACTCAATCAGGGACGA
 
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rJMFF020L19+          GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
rJMFF031F21+          GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
rJMSF041N17+          GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
                      ____________________________________________________________
consensus             GGAGGCTAAGTTTAAGCTTTGCAAAGTCCGCTCTGTCCAGTTTGGAAAGAAGGGAATTCC
 
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rJMFF020L19+          ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMFF031F21+          ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMFF043E04+                                      ATCCGCTACCCTGATCCTCTCATCAAGGCTAA
rJMSF041N17+          ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
                      ____________________________________________________________
consensus             ATTCATCAACACCTATGATGGTAGAACCATCCGCTACCCTGATCCTCTCATCAAGGCTAA
 
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rJMFF020L19+          TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
rJMFF031F21+          TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
rJMFF043E04+          TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTGACGTN
rJMSF041N17+          TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
                      ____________________________________________________________
consensus             TGACACAGTAAAGCTGGACCTGGAGAGCAACAAGGTTGTTGACTTCATCAAGTTTGACGT
 
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rJMFF020L19+          GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMFF031F21+          GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMFF043E04+          GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
rJMSF041N17+          GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
                      ____________________________________________________________
consensus             GGGGAATGTTGTTATGGTCACTGGTGGAAGAAACAGGGGACGTGTTGGTGTCCTCAAGAA
 
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rJMFF020L19+          TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMFF031F21+          TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMFF043E04+          TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
rJMSF041N17+          TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
                      ____________________________________________________________
consensus             TAGGGAGAAGCATAAGGGAAGCTTCGAGACTGTTCACATCCAGGATGCCACTGGGCATGA
 
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rJMFF020L19+          GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMFF031F21+          GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMFF043E04+          GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
rJMSF041N17+          GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
                      ____________________________________________________________
consensus             GTTTGCTACTCGTTTGGGGAATGTGTACACTATTGGAAAAGGCACCAAGCCATGGGTTTC
 
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rJMFF020L19+          TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMFF031F21+          TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMFF043E04+          TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
rJMSF041N17+          TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
                      ____________________________________________________________
consensus             TCTTCCCAAGGGTAAGGGTATCAAGCTCTCCATCATCGAAGAGGCAAAGAAGAGGCTTGC
 
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rJMFF020L19+          TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
rJMFF031F21+          TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
rJMFF043E04+          TGCTCAGTCTGCAATCACTGCTTAAA                                  
rJMSF041N17+          TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
                      ____________________________________________________________
consensus             TGCTCAGTCTGCAATCACTGCTTAAATGCACTGTAGGCTTTCTTCCAATACCCCATATCT
 
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rJMFF020L19+          GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAAT        
rJMFF031F21+          GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAAT        
rJMSF041N17+          GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAATTTTACTTT
                      ____________________________________________________________
consensus             GCTTTGAAGTAATTAGAGTTTGATAGAATTTTGTTTTGCAGGTTGAACTAATTTTACTTT
 
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rJMSF041N17+          TTGTTAGCAATAGATTTATTATTTTAATGTGTAATTCTGTCCTGTTTTCCGAATTCCTAT
                      ____________________________________________________________
consensus             TTGTTAGCAATAGATTTATTATTTTAATGTGTAATTCTGTCCTGTTTTCCGAATTCCTAT