Contig 001454:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M03Sequence382002399 (2)ref|XP_011094438.1|7e-22PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 716001454 (2)ref|XP_009792061.1|7e-112PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400
JMSF041J16Sequence804002399 (2)ref|XP_011094438.1|1e-70PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 631001454 (2)ref|XP_009792061.1|8e-84PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400

Alignment

This contig is upended


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rJMSF003M03+                                                    GAATGTGAAGTCATCAAA
                      ____________________________________________________________
consensus                                                       GAATGTGAAGTCATCAAA
 
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rJMSF003M03+          TGTGCTGCTAGACAAGAATGGGGTTGCCTGCATCTCAGATTTCGGGTTGTCGTTGCTTCT
                      ____________________________________________________________
consensus             TGTGCTGCTAGACAAGAATGGGGTTGCCTGCATCTCAGATTTCGGGTTGTCGTTGCTTCT
 
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rJMSF003M03+          GAACCCCGTCCACGCCATAGCCAGATTGGGAGGGTACAAGGCCCCAGAACAGGCAGAAAT
rJMSF041J16+                                       GAGGGTACAAGGCCCCAGAACAGGCAGAAAT
                      ____________________________________________________________
consensus             GAACCCCGTCCACGCCATAGCCAGATTGGGAGGGTACAAGGCCCCAGAACAGGCAGAAAT
 
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rJMSF003M03+          CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
rJMSF041J16+          CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
                      ____________________________________________________________
consensus             CAAGAGGCTATCACAGAAAGCAGATGTGTACAGCTTCGGGGTTCTGCTGCTGGAAGTGCT
 
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rJMSF003M03+          GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
rJMSF041J16+          GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
                      ____________________________________________________________
consensus             GACAGGGAGGGCTCCTTCTCAGTACCCTTCTCCGACACGGCCAAGGGTGGCGGCAGAGGA
 
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rJMSF003M03+          GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
rJMSF041J16+          GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
                      ____________________________________________________________
consensus             GGAGGAGATGGCGGTGGATCTGCCGAAATGGGTGAGATCAGTGGTGAGGGATGAGTGGAC
 
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rJMSF003M03+          AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGGTGTC
rJMSF041J16+          AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGATGTC
                      ____________________________________________________________
consensus             AGCTGAGGTGTTTGATCAAGAACTGCTGAGGTACAAGAACATTGAGGAAGAACTGGTGTC
 
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rJMSF003M03+          AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
rJMSF041J16+          AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
                      ____________________________________________________________
consensus             AATGCTGCATATTGCATTGGCTTGTGTGGTTCAGCAGCCTGAGAAAAGGCCTGCCATGGC
 
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rJMSF003M03+          TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
rJMSF041J16+          TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
                      ____________________________________________________________
consensus             TGAAGTTGCTAAGCTCATAGAGGAGATCAGGGTGGTGCAATCTCCTTTGGGCGAAGACTA
 
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rJMSF003M03+          TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
rJMSF041J16+          TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
                      ____________________________________________________________
consensus             TGACGAATCGCGCAATTCGATCTCGCCATCTCTTGCCACCACCGAGGATGGAATGTAATG
 
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rJMSF003M03+          GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
rJMSF041J16+          GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
                      ____________________________________________________________
consensus             GCATATATGATATGATTTCCGGTTTCCACTTAGGTCTGCAATAACATGTTGCCATGTAAT
 
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rJMSF003M03+          ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
rJMSF041J16+          ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
                      ____________________________________________________________
consensus             ATTTGTTTGCTTCATTTGTGTAATTCCTTTGTTGTGCTGCATTTGGGAAGATGAGCTGAT
 
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rJMSF003M03+          CTAGCCTAGATAACAGGTGGTCAAGAAACCAGATCCCA                      
rJMSF041J16+          CTAGCCTAGATAGCAGGTGGTCAAGAAACCAGATCCCATGATTTCAATGTAATTCTTTGC
                      ____________________________________________________________
consensus             CTAGCCTAGATAGCAGGTGGTCAAGAAACCAGATCCCATGATTTCAATGTAATTCTTTGC