Contig 001453:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040E02Sequence547006473 (6)ref|XP_009761641.1|7e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana762001453 (5)ref|XP_009623669.1|2e-30PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMFF042M01Sequence658006473 (6)ref|XP_009623669.1|1e-52PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana615001453 (5)
JMSF017F22Sequence227006473 (6)ref|XP_010266472.1|8e-05PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nelumbo n718001453 (5)ref|XP_009623669.1|1e-26PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana
JMSF028J10Sequence670006473 (6)ref|XP_009623669.1|2e-59PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana722001453 (5)gb|KHN06295.1|4e-18Hypothetical protein glysoja_021133 [Glycine soja]
JMSF041I03Sequence794006473 (6)ref|XP_009623669.1|7e-83PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana767001453 (5)ref|XP_009623669.1|2e-12PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF040E02+ CAGCAGCAGCTGGAATAGGAG
                      ____________________________________________________________
consensus CAGCAGCAGCTGGAATAGGAG
 
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rJMFF040E02+ CATTGGCGTTTTCAGAGGTAGAAACAATTCTTTCAACTGCTCGGTTCTGCTGCAATTATT
rJMSF017F22+ ATTATT
rJMSF028J10+ ATTATT
                      ____________________________________________________________
consensus CATTGGCGTTTTCAGAGGTAGAAACAATTCTTTCAACTGCTCGGTTCTGCTGCAATTATT
 
. : . : . : . : . : . :
rJMFF040E02+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
rJMSF017F22+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
rJMSF028J10+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAACCAAGT
rJMSF041I03+ GGACAGAAAGAAAACACTTGAA-CGAGT
                      ____________________________________________________________
consensus CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
 
. : . : . : . : . : . :
rJMFF040E02+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF017F22+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF028J10+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF041I03+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAAGGGAGCTTGTAGATGAGATTAAGCAAA
                      ____________________________________________________________
consensus TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
 
. : . : . : . : . : . :
rJMFF040E02+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF017F22+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF028J10+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMFF042M01+ CAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF041I03+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
                      ____________________________________________________________
consensus TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
 
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rJMFF040E02+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF017F22+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF028J10+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMFF042M01+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF041I03+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
                      ____________________________________________________________
consensus AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
 
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rJMFF040E02+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF017F22+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF028J10+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMFF042M01+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF041I03+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
                      ____________________________________________________________
consensus AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
 
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rJMFF040E02+ CACCTACTGCAACCCCAACCCCAAGACCACTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF017F22+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF028J10+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMFF042M01+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF041I03+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
                      ____________________________________________________________
consensus CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
 
. : . : . : . : . : . :
rJMFF040E02+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF017F22+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF028J10+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMFF042M01+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF041I03+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
                      ____________________________________________________________
consensus AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
 
. : . : . : . : . : . :
rJMFF040E02+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF017F22+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF028J10+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMFF042M01+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF041I03+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
                      ____________________________________________________________
consensus CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
 
. : . : . : . : . : . :
rJMFF040E02+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF017F22+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF028J10+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMFF042M01+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF041I03+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
                      ____________________________________________________________
consensus AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
 
. : . : . : . : . : . :
rJMFF040E02+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF017F22+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF028J10+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMFF042M01+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF041I03+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
                      ____________________________________________________________
consensus TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
 
. : . : . : . : . : . :
rJMFF040E02+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF017F22+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF028J10+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMFF042M01+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF041I03+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
                      ____________________________________________________________
consensus TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
 
. : . : . : . : . : . :
rJMFF040E02+ GTGATGTAGATGTAGTAGCTGAG
rJMSF017F22+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAA
rJMSF028J10+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAAT
rJMFF042M01+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
rJMSF041I03+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
                      ____________________________________________________________
consensus GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
 
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rJMFF042M01+ GTGAATAAATGCATGAATGTAACTATGAACTAC
rJMSF041I03+ GTGAATAAATGCATGAATGTAACTATGAACTACAGAACAGCAGGCAGCTAGATCCCGTCT
                      ____________________________________________________________
consensus GTGAATAAATGCATGAATGTAACTATGAACTACAGAACAGCAGGCAGCTAGATCCCGTCT