| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040E02 | Sequence | 547 | 006473 (6) | ref|XP_009761641.1| | 7e-30 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana | 762 | 001453 (5) | ref|XP_009623669.1| | 2e-30 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana |
| JMFF042M01 | Sequence | 658 | 006473 (6) | ref|XP_009623669.1| | 1e-52 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana | 615 | 001453 (5) | |||
| JMSF017F22 | Sequence | 227 | 006473 (6) | ref|XP_010266472.1| | 8e-05 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nelumbo n | 718 | 001453 (5) | ref|XP_009623669.1| | 1e-26 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana |
| JMSF028J10 | Sequence | 670 | 006473 (6) | ref|XP_009623669.1| | 2e-59 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana | 722 | 001453 (5) | gb|KHN06295.1| | 4e-18 | Hypothetical protein glysoja_021133 [Glycine soja] |
| JMSF041I03 | Sequence | 794 | 006473 (6) | ref|XP_009623669.1| | 7e-83 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana | 767 | 001453 (5) | ref|XP_009623669.1| | 2e-12 | PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMFF040E02+ CAGCAGCAGCTGGAATAGGAG
____________________________________________________________
consensus CAGCAGCAGCTGGAATAGGAG
. : . : . : . : . : . :
rJMFF040E02+ CATTGGCGTTTTCAGAGGTAGAAACAATTCTTTCAACTGCTCGGTTCTGCTGCAATTATT
rJMSF017F22+ ATTATT
rJMSF028J10+ ATTATT
____________________________________________________________
consensus CATTGGCGTTTTCAGAGGTAGAAACAATTCTTTCAACTGCTCGGTTCTGCTGCAATTATT
. : . : . : . : . : . :
rJMFF040E02+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
rJMSF017F22+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
rJMSF028J10+ CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAACCAAGT
rJMSF041I03+ GGACAGAAAGAAAACACTTGAA-CGAGT
____________________________________________________________
consensus CAAGTTTTCAGCAAGAAACTGCTGTTTGCAGAGGACAGAAAGAAAACACTTGAA-CAAGT
. : . : . : . : . : . :
rJMFF040E02+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF017F22+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF028J10+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
rJMSF041I03+ TGATGAGTTCTTAAACACCAAGGTTGCTCCTAAGGGAGCTTGTAGATGAGATTAAGCAAA
____________________________________________________________
consensus TGATGAGTTCTTAAACACCAAGGTTGCTCCTAA-GGAGCTTGTAGATGAGATTAAGCAAA
. : . : . : . : . : . :
rJMFF040E02+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF017F22+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF028J10+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMFF042M01+ CAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
rJMSF041I03+ TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
____________________________________________________________
consensus TAGGGAAGGCACTTCTACCAACTCCAGTAAGTAGCAAGGCTCTACCTGCACCTACAGAGG
. : . : . : . : . : . :
rJMFF040E02+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF017F22+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF028J10+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMFF042M01+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
rJMSF041I03+ AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
____________________________________________________________
consensus AAAGCCCTCCTGCAGCAGCTGAATCAGTTTCAAACGTGAGCATTGCAACACCAAAAGAAG
. : . : . : . : . : . :
rJMFF040E02+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF017F22+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF028J10+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMFF042M01+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
rJMSF041I03+ AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
____________________________________________________________
consensus AAGCAGCGCCTCCAGTGATCAATTCAGTTGCTAAAACAGAAGTAGTCCAAGCAGAAGAAG
. : . : . : . : . : . :
rJMFF040E02+ CACCTACTGCAACCCCAACCCCAAGACCACTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF017F22+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF028J10+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMFF042M01+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
rJMSF041I03+ CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
____________________________________________________________
consensus CACCTACTGCAACCCCAACCCCAAGACCGCTTTCTCCATATCCAAACTACCCGGATTTTA
. : . : . : . : . : . :
rJMFF040E02+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF017F22+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF028J10+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMFF042M01+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
rJMSF041I03+ AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
____________________________________________________________
consensus AGCCTCCATCCTCGCCAATGCCTTCACAGCCATAGATTCGATCGATCTTCTTGCAGATTA
. : . : . : . : . : . :
rJMFF040E02+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF017F22+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF028J10+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMFF042M01+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
rJMSF041I03+ CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
____________________________________________________________
consensus CAGCGTTGAAGTGCGTATATTAGTTACACATGCAGGTACTTAATTGTTTGTTTGTCCAAG
. : . : . : . : . : . :
rJMFF040E02+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF017F22+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF028J10+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMFF042M01+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
rJMSF041I03+ AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
____________________________________________________________
consensus AATTATATATCAAAGCTAGCTAGCTAGCTACTTGTTCCTTGCAAGATTTTTGCTGTAAGA
. : . : . : . : . : . :
rJMFF040E02+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF017F22+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF028J10+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMFF042M01+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
rJMSF041I03+ TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
____________________________________________________________
consensus TAACTTTCAGCGCAAGAGCTAGAAGCTAGGAAAATTGAGCTAGAGGGGCCTTGGCTTTAA
. : . : . : . : . : . :
rJMFF040E02+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF017F22+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF028J10+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMFF042M01+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
rJMSF041I03+ TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
____________________________________________________________
consensus TTTTCTTCATGTCATGTCTGCATGTTTTACTATAATTTGTATTTTCACTATATGTTTGAT
. : . : . : . : . : . :
rJMFF040E02+ GTGATGTAGATGTAGTAGCTGAG
rJMSF017F22+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAA
rJMSF028J10+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAAT
rJMFF042M01+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
rJMSF041I03+ GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
____________________________________________________________
consensus GTGATGTAGATGTAGTAGCTGAGTGTGAACGTGATTATATCATAAAATTACAAATGGAAA
. : . : . : . : . : . :
rJMFF042M01+ GTGAATAAATGCATGAATGTAACTATGAACTAC
rJMSF041I03+ GTGAATAAATGCATGAATGTAACTATGAACTACAGAACAGCAGGCAGCTAGATCCCGTCT
____________________________________________________________
consensus GTGAATAAATGCATGAATGTAACTATGAACTACAGAACAGCAGGCAGCTAGATCCCGTCT