Contig 001452:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014I07Sequence247022076658001452 (2)ref|XP_006370375.1|3e-32hypothetical protein POPTR_0001s42100g [Populus trichocarpa] gb|ERP66944.1| hypo
JMSF041H02Sequence791018999ref|XP_006356818.1|2e-65PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27662001452 (2)emb|CBI20432.3|1e-32unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF041H02+                                                                    GG
                      ____________________________________________________________
consensus                                                                       GG
 
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rJMSF014I07+                                        TGGTTATATGTCGCCGGAGTACGCTGGACA
rJMSF041H02+          AGCAAATACAAACCGAGCTGCTGGAACACTTGGTTATATGTCGCCGGAGTACGCTGGACA
                      ____________________________________________________________
consensus             AGCAAATACAAACCGAGCTGCTGGAACACTTGGTTATATGTCGCCGGAGTACGCTGGACA
 
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rJMSF014I07+          TGGTGTCTTTTCCATTAAATCAGANGTGTTCAGCTTTGGNGTTTTGGTACTAGAAATTGT
rJMSF041H02+          TGGNGTCTTTTCCATTAAATCAGATGNGNTCAGCTTTGGTGNTTTGGTACTAGAAATTGT
                      ____________________________________________________________
consensus             TGGTGTCTTTTCCATTAAATCAGATGTGTTCAGCTTTGGTGTTTTGGTACTAGAAATTGT
 
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rJMSF014I07+          GAGCGGGAAAAGAAATAGGGAATTTTNTCATCATCAAGNTCNCTATGNGAACCTTNTTGC
rJMSF041H02+          GAGCGGGAAAAGAAATAGGGAATTTTNTCATCATCAAGATCNCTATGNGAACCTTNTTGC
                      ____________________________________________________________
consensus             GAGCGGGAAAAGAAATAGGGAATTTTNTCATCATCAAGATCNCTATGNGAACCTTNTTGC
 
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rJMSF014I07+          CCNTGTATGTCNCNCTTTTATGCATATTTATTTATTCNTTAAGTTTGAATTCAAGTCNTG
rJMSF041H02+          CCNTGTATGTCACNCTTTTANGCATATTTATTTATTCNTTAAGTTTGAATTCAAGTCNTG
                      ____________________________________________________________
consensus             CCNTGTATGTCACNCTTTTATGCATATTTATTTATTCNTTAAGTTTGAATTCAAGTCNTG
 
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rJMSF014I07+          ATCTACTAANTTATATTTATTATAGGCNTGGAAGCTTTATAGNGATGGCNGNTTGATTGA
rJMSF041H02+          ATCTACTAANTTATATTTATTATAGGCNTGGAAGCNTTATAGNGATGGCNGATTGATTGA
                      ____________________________________________________________
consensus             ATCTACTAANTTATATTTATTATAGGCNTGGAAGCTTTATAGNGATGGCNGATTGATTGA
 
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rJMSF014I07+          ACTTGTAGNCGNGCNTCTAGNTGCGCCNTGNGATTTGCCNCNAGTTNTAAGNTCNATCCN
rJMSF041H02+          ACTTGTAGACGNGCNTCTAGATGCGCCNTGTGATTTGCCNCAAGTTNTAAGATCNATCCN
                      ____________________________________________________________
consensus             ACTTGTAGACGNGCNTCTAGATGCGCCNTGTGATTTGCCNCAAGTTNTAAGATCNATCCN
 
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rJMSF014I07+          TGTCAGCCTATTATGNGTTCAACNCTATCCTGAAGATAGGCCNAGCNCGTNTTCCNTAGT
rJMSF041H02+          TGTCAGCCTATTATGNGTTCAACNCTATCCTGAAGNTAGGCCNAGCNCGTNTTCCNTAGT
                      ____________________________________________________________
consensus             TGTCAGCCTATTATGNGTTCAACNCTATCCTGAAGATAGGCCNAGCNCGTNTTCCNTAGT
 
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rJMSF014I07+          TCATATGTTAGCTAACAATGNTGAGTTACCCNTTGNTAAAGNGCCCGGNTTNTTCNCAAA
rJMSF041H02+          TCATATGTTAGNTAACNATGNTGNGTTACCCNTTGNTAAAGNGCCCGGNTTNTTCNCAAA
                      ____________________________________________________________
consensus             TCATATGTTAGCTAACAATGNTGAGTTACCCNTTGNTAAAGNGCCCGGNTTNTTCNCAAA
 
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rJMSF014I07+          AACNAGGTTAAATGNGNCGAAGTNTTCTTTAGGCGNTGAAATATCNTGTTCTATAAATGA
rJMSF041H02+          AACAAGGTTAAATGNGNCGAAGTNTTCTTTAGGCGNTGAAATATCNTGTTCTATAAATGA
                      ____________________________________________________________
consensus             AACAAGGTTAAATGNGNCGAAGTNTTCTTTAGGCGNTGAAATATCNTGTTCTATAAATGA
 
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rJMSF014I07+          AGTCNCCNTCTCATCNTTCGGTCCCCGTTAGAAAGNGNACNTATATAATAATTGAATAAT
rJMSF041H02+          AGTCNCCNTCTCATCNTTCGGTCCCCGTTAGAAAGNGTACNTATATAATAATTGAATAAT
                      ____________________________________________________________
consensus             AGTCNCCNTCTCATCNTTCGGTCCCCGTTAGAAAGNGTACNTATATAATAATTGAATAAT
 
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rJMSF014I07+          TGAGNTACGNTTTTTTTTTTGAAAAACGTTATTTCTATTTATATTTACCCTAAGTTT   
rJMSF041H02+          TGAGNTACGTTTTTTTTTTTGAAAAACGTTATTTCTATTTATATTTACCCTAAGTTTGTA
                      ____________________________________________________________
consensus             TGAGNTACGTTTTTTTTTTTGAAAAACGTTATTTCTATTTATATTTACCCTAAGTTTGTA