| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF033G05 | Sequence | 688 | 003926 (3) | ref|XP_006363022.1| | 1e-42 | PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum] | 735 | 001449 (3) | ref|XP_009784447.1| | 3e-131 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
| JMSF040O19 | Sequence | 659 | 003926 (3) | ref|XP_002272334.1| | 8e-37 | PREDICTED: scarecrow-like transcription factor PAT1 [Vitis vinifera] ref|XP_0106 | 733 | 001449 (3) | ref|XP_009784447.1| | 6e-130 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
| JMSF052P23 | Sequence | 581 | 003926 (3) | ref|XP_007215518.1| | 3e-16 | hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti | 803 | 001449 (3) | ref|XP_009784447.1| | 2e-142 | PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref| |
This contig is upended
. : . : . : . : . : . :
rJMSF052P23+ GGCGGTCCACCCCACATTCGAATTACGGGTATAGATGACTCGAGTTTATCTCATG
____________________________________________________________
consensus GGCGGTCCACCCCACATTCGAATTACGGGTATAGATGACTCGAGTTTATCTCATG
. : . : . : . : . : . :
rJMSF052P23+ CACACGGTGGAGGATTGAGTCTTGTAGGCAAAAGGCTATCTAAACTCGCGGAGTCCTTCA
rJMSF033G05+ GCGGAGTCCTTCA
rJMSF040O19+ GCGGAGTCCTTCA
____________________________________________________________
consensus CACACGGTGGAGGATTGAGTCTTGTAGGCAAAAGGCTATCTAAACTCGCGGAGTCCTTCA
. : . : . : . : . : . :
rJMSF052P23+ AGGTGCCCTTCGAATTCCATGCTGCAGCCATACCCGGGAATGATGTTCAGCTCGAGAACC
rJMSF033G05+ AGGTGCCCTTCGAATTCCATGCTGCAGCCATACCCGGGAATGATGTTCAGCTCGAGAACC
rJMSF040O19+ AGGTGCCCTTCGAATTCCATGCTGCAGCCATACCCGGGAATGATGTTCAGCTCGAGAACC
____________________________________________________________
consensus AGGTGCCCTTCGAATTCCATGCTGCAGCCATACCCGGGAATGATGTTCAGCTCGAGAACC
. : . : . : . : . : . :
rJMSF052P23+ CGGGGATTCAAATTCAACCCGGGGAAGCACTGGCTGTGAACTTTGCGTATATGCTGCACC
rJMSF033G05+ CGGGGATTCAAATTCAACCCGGGGAAGCACTGGCTGTGAACTTTGCGTATATGCTGCACC
rJMSF040O19+ CGGGGATTCAAATTCAACCCGGGGAAGCACTGGCTGTGAACTTTGCGTATATGCTGCACC
____________________________________________________________
consensus CGGGGATTCAAATTCAACCCGGGGAAGCACTGGCTGTGAACTTTGCGTATATGCTGCACC
. : . : . : . : . : . :
rJMSF052P23+ ACATACCCGACGAGAGCGTGAGCACCCAAAACCATCGGGACGAGCTATTGAGGCTGGTGA
rJMSF033G05+ ACATACCCGACGAGAGCGTGAGCACCCAAAACCATCGGGACGAGCTATTGAGGCTGGTGA
rJMSF040O19+ ACATACCCGACGAGAGCGTGAGCACCCAAAACCATCGGGACGAGCTATTGAGGCTGGTGA
____________________________________________________________
consensus ACATACCCGACGAGAGCGTGAGCACCCAAAACCATCGGGACGAGCTATTGAGGCTGGTGA
. : . : . : . : . : . :
rJMSF052P23+ AAAGCCTGAATCCCAAGGTGGTTACTCTCGTAGAGCAAGAGTCTAATACCAACACCTCTG
rJMSF033G05+ AAAGCCTGAATCCCAAGGTGGTTACTCTCGTAGAGCAAGAGTCTAATACCAACACCTCTG
rJMSF040O19+ AAAGCCTGAATCCCAAGGTGGTTACTCTCGTAGAGCAAGAGTCTAATACCAACACCTCTG
____________________________________________________________
consensus AAAGCCTGAATCCCAAGGTGGTTACTCTCGTAGAGCAAGAGTCTAATACCAACACCTCTG
. : . : . : . : . : . :
rJMSF052P23+ CATTCTTCCCGCGATTCCTCGAGACCTTGGACTACTACACTGCAATGTTCGAATCGATTG
rJMSF033G05+ CATTCTTCCCGCGATTCCTCGAGACCTTGGACTACTACACTGCAATGTTCGAATCGATTG
rJMSF040O19+ CATTCTTCCCGCGATTCCTCGAGACCTTGGACTACTACACTGCAATGTTCGAATCGATTG
____________________________________________________________
consensus CATTCTTCCCGCGATTCCTCGAGACCTTGGACTACTACACTGCAATGTTCGAATCGATTG
. : . : . : . : . : . :
rJMSF052P23+ ACGTCACTCTCCCTCGGGACCACAAGGAGCGGATCAACGTGGAGCAGCACTGTCTGGCTA
rJMSF033G05+ ACGTCACTCTCCCTCGGGACCACAAGGAGCGGATCAACGTGGAGCAGCACTGTCTGGCTA
rJMSF040O19+ ACGTCACTCTCCCTCGGGACCACAAGGAGCGGATCAACGTGGAGCAGCACTGTCTGGCTA
____________________________________________________________
consensus ACGTCACTCTCCCTCGGGACCACAAGGAGCGGATCAACGTGGAGCAGCACTGTCTGGCTA
. : . : . : . : . : . :
rJMSF052P23+ GAGACGTGGTGAACATTGTGGCGTGCGAGGGGATTGAAAGGGTGGAGCGACACGAGCTTC
rJMSF033G05+ GAGACGTGGTGAACATTGTGGCGTGCGAGGGGATTGAAAGGGTGGAGCGACACGAGCTTC
rJMSF040O19+ GAGACGTGGTGAACATTGTGGCGTGCGAGGGGATTGAAAGGGTGGAGCGACACGAGCTTC
____________________________________________________________
consensus GAGACGTGGTGAACATTGTGGCGTGCGAGGGGATTGAAAGGGTGGAGCGACACGAGCTTC
. : . : . : . : . : . :
rJMSF052P23+ TTGGGAAGTGGATGTCTCGGTTCAGAATGGCCGGTTTTAGCCCGTACCCCTTGAGTTCAG
rJMSF033G05+ TTGGGAAGTGGATGTCTCGGTTCAGAATGGCCGGTTTTAGCCCGTACCCCTTGAGTTCAG
rJMSF040O19+ TTGGGAAGTGGATGTCTCGGTTCAGAATGGCCGGTTTTAGCCCGTACCCCTTGAGTTCAG
____________________________________________________________
consensus TTGGGAAGTGGATGTCTCGGTTCAGAATGGCCGGTTTTAGCCCGTACCCCTTGAGTTCAG
. : . : . : . : . : . :
rJMSF052P23+ TGGTGAATGCCACAATCAAGAAACTGTTGGAAAGCTATTCTGAGAAATACAGGCTTGAAG
rJMSF033G05+ TGGTGAATGCCACAATCAAGAAACTGTTGGAAAGCTATTCTGAGAAATACAGGCTTGAAG
rJMSF040O19+ TGGTGAATGCCACAATCAAGAAACTGTTGGAAAGCTATTCTGAGAAATACAGGCTTGAAG
____________________________________________________________
consensus TGGTGAATGCCACAATCAAGAAACTGTTGGAAAGCTATTCTGAGAAATACAGGCTTGAAG
. : . : . : . : . : . :
rJMSF052P23+ AGAGAAATGGAGCCCTTTATCTTGGTTGGATGAACAGAGATTTGGTTGCTTCCTGTGCCT
rJMSF033G05+ AGAGAAATGGAGCCCTTTATCTTGGTTGGATGAACAGAGATTTGGTTGCTTCCTGTGCCT
rJMSF040O19+ AGAGAAATGGAGCCCTTTATCTTGGTTGGATGAACAGAGATTTGGTTGCTTCCTGTGCCT
____________________________________________________________
consensus AGAGAAATGGAGCCCTTTATCTTGGTTGGATGAACAGAGATTTGGTTGCTTCCTGTGCCT
. : . : . : . : . : . :
rJMSF052P23+ GGAAGTGAAAACTGAAAACCATCAACCCTGTTTTCTGTGTCTCTTTTTCTGCCCTCTGTA
rJMSF033G05+ GGAAGTGAAAACTGAAAACCATCAACCCTGTTTTCTGTGTCTCTTTTTCTGCCCTCTGTA
rJMSF040O19+ GGAAGTGAAAACTGAAAACCATCAACCCTGTTTTCTGTGTCTCTTTTTCTGCCCTCTGTA
____________________________________________________________
consensus GGAAGTGAAAACTGAAAACCATCAACCCTGTTTTCTGTGTCTCTTTTTCTGCCCTCTGTA
. : . : . : . : . : . :
rJMSF052P23+ ATGGNTAATGTTCATAATCATTAAAACC
rJMSF033G05+ ATGGCTAATGTTCATAATCATTAAAACCATGGGTTTCTTGGCACTGTATTCTGCT
rJMSF040O19+ ATGGCTAATGTTCATAATCATTAAAACCATGGGTTTCTTGGCACTGTATTCTGCTTCAAT
____________________________________________________________
consensus ATGGCTAATGTTCATAATCATTAAAACCATGGGTTTCTTGGCACTGTATTCTGCTTCAAT