Contig 001444:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039B20Sequence657003832 (2)ref|XP_009625617.1|179PREDICTED: uncharacterized protein LOC104116463 [Nicotiana tomentosiformis] ref|778001444 (2)ref|XP_009625617.1|191PREDICTED: uncharacterized protein LOC104116463 [Nicotiana tomentosiformis] ref|
JMSF041L12Sequence759003832 (2)ref|XP_009625617.1|234PREDICTED: uncharacterized protein LOC104116463 [Nicotiana tomentosiformis] ref|777001444 (2)ref|XP_009781567.1|239PREDICTED: uncharacterized protein LOC104230446 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041L12+ AAATNCNTTNGGTGGTCT
                      ____________________________________________________________
consensus AAATNCNTTNGGTGGTCT
 
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rJMSF041L12+ GGAACAATATCAGTGCATGTTTTAGTGGACCAGACCAGAGAAGATCACTCGATGAATTTC
                      ____________________________________________________________
consensus GGAACAATATCAGTGCATGTTTTAGTGGACCAGACCAGAGAAGATCACTCGATGAATTTC
 
. : . : . : . : . : . :
rJMSF041L12+ AAGCAAGTGAAAACTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
rJMSF039B20+ CTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
                      ____________________________________________________________
consensus AAGCAAGTGAAAACTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
 
. : . : . : . : . : . :
rJMSF041L12+ CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
rJMSF039B20+ CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
                      ____________________________________________________________
consensus CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
 
. : . : . : . : . : . :
rJMSF041L12+ TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
rJMSF039B20+ TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
                      ____________________________________________________________
consensus TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
 
. : . : . : . : . : . :
rJMSF041L12+ GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
rJMSF039B20+ GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
                      ____________________________________________________________
consensus GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
 
. : . : . : . : . : . :
rJMSF041L12+ GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
rJMSF039B20+ GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
                      ____________________________________________________________
consensus GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
 
. : . : . : . : . : . :
rJMSF041L12+ GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
rJMSF039B20+ GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
                      ____________________________________________________________
consensus GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
 
. : . : . : . : . : . :
rJMSF041L12+ TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
rJMSF039B20+ TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
                      ____________________________________________________________
consensus TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
 
. : . : . : . : . : . :
rJMSF041L12+ AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
rJMSF039B20+ AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
                      ____________________________________________________________
consensus AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
 
. : . : . : . : . : . :
rJMSF041L12+ TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
rJMSF039B20+ TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
                      ____________________________________________________________
consensus TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
 
. : . : . : . : . : . :
rJMSF041L12+ AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
rJMSF039B20+ AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
                      ____________________________________________________________
consensus AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
 
. : . : . : . : . : . :
rJMSF041L12+ GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
rJMSF039B20+ GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
                      ____________________________________________________________
consensus GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
 
. : . : . : . : . : . :
rJMSF041L12+ ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATAT
rJMSF039B20+ ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATATTATGCATTGTTGCATAAATTA
                      ____________________________________________________________
consensus ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATATTATGCATTGTTGCATAAATTA
 
. : . : . : . : . : . :
rJMSF039B20+ AAAGAGTAGTATGTTAGTCCATATGGTTAGCCTTCCATTCTCTTCATTTACTGTCCATTT
                      ____________________________________________________________
consensus AAAGAGTAGTATGTTAGTCCATATGGTTAGCCTTCCATTCTCTTCATTTACTGTCCATTT