Contig 001444:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041L12+                                                    AAATNCNTTNGGTGGTCT
                      ____________________________________________________________
consensus                                                       AAATNCNTTNGGTGGTCT
 
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rJMSF041L12+          GGAACAATATCAGTGCATGTTTTAGTGGACCAGACCAGAGAAGATCACTCGATGAATTTC
                      ____________________________________________________________
consensus             GGAACAATATCAGTGCATGTTTTAGTGGACCAGACCAGAGAAGATCACTCGATGAATTTC
 
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rJMSF041L12+          AAGCAAGTGAAAACTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
rJMSF039B20+                       CTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
                      ____________________________________________________________
consensus             AAGCAAGTGAAAACTGGATTTATGAAAAGATTCGAAGGTTGCTGGAGAGTTGAACCCCTT
 
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rJMSF041L12+          CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
rJMSF039B20+          CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
                      ____________________________________________________________
consensus             CTTGTCGATGAAGAACTATGCCATCCATACAGACCTAATAATTTGGCAGATTATGTTTCG
 
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rJMSF041L12+          TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
rJMSF039B20+          TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
                      ____________________________________________________________
consensus             TACACAAAGGGGAAAGGGAGGATTGGATCAAAGGTGAGCTTGGAGCAACTAATACAGCCG
 
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rJMSF041L12+          GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
rJMSF039B20+          GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
                      ____________________________________________________________
consensus             GCTCTTGTTCCTCCCCCGCCCATTTCCTGGTACGTTAGAGGAATCACCACAAAGACCACT
 
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rJMSF041L12+          GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
rJMSF039B20+          GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
                      ____________________________________________________________
consensus             GAGATGATTATAAACGACTTGCAAGCTGAAACTGCTCGAATCAGAAGATCATCCAGCACT
 
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rJMSF041L12+          GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
rJMSF039B20+          GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
                      ____________________________________________________________
consensus             GAGGATTTGAGAAGTCTGGGGTTATCTGGAGAAAGTTCTGGTGAATCACAAACCGATAGT
 
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rJMSF041L12+          TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
rJMSF039B20+          TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
                      ____________________________________________________________
consensus             TTATGCAATATAAAAGAAAGATGGGCCTTGAAGAGAAGGAAAACAAGGAACCGTCGTAAT
 
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rJMSF041L12+          AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
rJMSF039B20+          AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
                      ____________________________________________________________
consensus             AGGAGGCACTCTTTCACCGGTCCTGCCAAGTGATAGTTGTCTTCATGGTACGGCAAAGAT
 
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rJMSF041L12+          TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
rJMSF039B20+          TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
                      ____________________________________________________________
consensus             TAAATTCATTATTTGACTGTGCCTGCTAAGTGATTCTTGTCCTTGTGGACTCAAAAGTTG
 
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rJMSF041L12+          AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
rJMSF039B20+          AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
                      ____________________________________________________________
consensus             AAACTCATTCTTTGAATGAGCCCGTCAAGTGTTCCCGGTTTCCATTAATCATTGTATACA
 
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rJMSF041L12+          GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
rJMSF039B20+          GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
                      ____________________________________________________________
consensus             GAATAGATGTTTATGACTAAGGAACATCAACATGTCATTTTAGGGTGATGAAAATGTAAT
 
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rJMSF041L12+          ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATAT                     
rJMSF039B20+          ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATATTATGCATTGTTGCATAAATTA
                      ____________________________________________________________
consensus             ATTTATCACACCTTCATATGGACTTTCGCTGTGTAATATTATGCATTGTTGCATAAATTA
 
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rJMSF039B20+          AAAGAGTAGTATGTTAGTCCATATGGTTAGCCTTCCATTCTCTTCATTTACTGTCCATTT
                      ____________________________________________________________
consensus             AAAGAGTAGTATGTTAGTCCATATGGTTAGCCTTCCATTCTCTTCATTTACTGTCCATTT