| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023L24 | Sequence | 693 | 010708 (3) | ref|XP_006368037.1| | 1e-61 | PREDICTED: aspartic proteinase-like protein 1-like [Solanum tuberosum] | 757 | 001443 (3) | ref|XP_009804210.1| | 4e-83 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana sylvestris] |
| JMSF027P23 | Sequence | 665 | 010708 (3) | ref|XP_006368037.1| | 3e-62 | PREDICTED: aspartic proteinase-like protein 1-like [Solanum tuberosum] | 640 | 001443 (3) | ref|XP_009804210.1| | 9e-71 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana sylvestris] |
| JMSF039A08 | Sequence | 694 | 010708 (3) | ref|XP_009804209.1| | 8e-72 | PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Nicotiana sylvestris] | 825 | 001443 (3) | ref|XP_009606652.1| | 8e-102 | PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
rJMSF039A08+ GGTTCCACATTCATTCTCTTTATGNTTTGACCAGAGCCATTCTGG
____________________________________________________________
consensus GGTTCCACATTCATTCTCTTTATGNTTTGACCAGAGCCATTCTGG
. : . : . : . : . : . :
rJMSF023L24+ GAAATCAAAGATTTACCCCC-TTTTGCCACC
rJMSF039A08+ GAGAATTTTCTTTGGTGATCAAGGGCCTGGAAATCAAAGATTTACCCCCTTTTTGCCACT
____________________________________________________________
consensus GAGAATTTTCTTTGGTGATCAAGGGCCTGGAAATCAAAGATTTACCCCCTTTTTGCCACT
. : . : . : . : . : . :
rJMSF023L24+ TGAAGGGAATTATAACAAATACATTGTGGAGGTGGAACATTATTGCGTTGAGAGTTCCTG
rJMSF039A08+ TGAAGGGAATTATAACAAATACATTGTGGAGGTGGAACATTATTGCGTTGAGAGTTCCTG
____________________________________________________________
consensus TGAAGGGAATTATAACAAATACATTGTGGAGGTGGAACATTATTGCGTTGAGAGTTCCTG
. : . : . : . : . : . :
rJMSF023L24+ TTTAAAGCAATCTGGATTTCGAGCACAAGTTGATAGTGGTTCATCTTTCACTCTCCTACC
rJMSF027P23+ TCTGGATTTCGAGCACAAGTTGATAGTGGTTCATCTTTCACTCTCCTACC
rJMSF039A08+ TTTAAAGCAATCTGGATTTCGAGCACAAGTTGATAGTGGTTCATCTTTCACTCTCCTACC
____________________________________________________________
consensus TTTAAAGCAATCTGGATTTCGAGCACAAGTTGATAGTGGTTCATCTTTCACTCTCCTACC
. : . : . : . : . : . :
rJMSF023L24+ ATACGAGACCTATAAGAAAGTTGTTAATAAGTTTGATGAACTAATGAATGCTACAAGGTC
rJMSF027P23+ ATACGAGACCTATAAGAAAGTTGTTAATAAGTTTGATGAACTAATGAATGCTACAAGGTC
rJMSF039A08+ ATACGAGACCTATAAGAAAGTTGTTAATAAGTTTGATGAACTAATGAATGCTACAAGGTC
____________________________________________________________
consensus ATACGAGACCTATAAGAAAGTTGTTAATAAGTTTGATGAACTAATGAATGCTACAAGGTC
. : . : . : . : . : . :
rJMSF023L24+ TAGCATAGATGTCTTTCACTACTGCTACAAGGCTCGTTCAGAGGGTTTACCAAATATTCC
rJMSF027P23+ TAGCATAGATGTCTTTCACTACTGCTACAAGGCTCGTTCAGAGGGTTTACCAAATATTCC
rJMSF039A08+ TAGCATAGATGTCTTTCACTACTGCTACAAGGCTCGTTCAGAGGGTTTACCAAATATTCC
____________________________________________________________
consensus TAGCATAGATGTCTTTCACTACTGCTACAAGGCTCGTTCAGAGGGTTTACCAAATATTCC
. : . : . : . : . : . :
rJMSF023L24+ CAGTATGAAGCTCATCCTTTCTGCCAACCAGAGTTTTGTGATTCAAAATCCCATGTTTCC
rJMSF027P23+ CAGTATGAAGCTCATCCTTTCTGCCAACCAGAGTTTTGTGATTCAAAATCCCATGTTTCC
rJMSF039A08+ CAGTATGAAGCTCATCCTTTCTGCCAACCAGAGTTTTGTGATTCAAAATCCCATGTTTCC
____________________________________________________________
consensus CAGTATGAAGCTCATCCTTTCTGCCAACCAGAGTTTTGTGATTCAAAATCCCATGTTTCC
. : . : . : . : . : . :
rJMSF023L24+ TATCCTCAACTATCAGGGAGTCAAATGTTACTGTTTAGGTGTACTGCCAATTGAAGGAAT
rJMSF027P23+ TATCCTCAACTATCAGGGAGTCAAATGTTACTGTTTAGGTGTACTGCCAATTGAAGGAAT
rJMSF039A08+ TATCCTCAACTATCAGGGAGTCAAATGTTACTGTTTAGGTGTACTGCCAATTGAAGGAAT
____________________________________________________________
consensus TATCCTCAACTATCAGGGAGTCAAATGTTACTGTTTAGGTGTACTGCCAATTGAAGGAAT
. : . : . : . : . : . :
rJMSF023L24+ ATATGGATTAATTGGACAAAACTTTATGACTGGATACCGGATGGTATTTGATTGGGAGAA
rJMSF027P23+ ATATGGATTAATTGGACAAAACTTTATGACTGGATACCGGATGGTATTTGATTGGGAGAA
rJMSF039A08+ ATATGGATTAATTGGACAAAACTTTATGACTGGATACCGGATGGTATTTGATTGGGAGAA
____________________________________________________________
consensus ATATGGATTAATTGGACAAAACTTTATGACTGGATACCGGATGGTATTTGATTGGGAGAA
. : . : . : . : . : . :
rJMSF023L24+ TTTGAAGTTGGGTTGGTCTGCTTCTAATTGTAAAGATTTGGATGATAATGATAAGGTTCC
rJMSF027P23+ TTTGAAGTTGGGTTGGTCTGCTTCTAATTGTAAAGATTTGGATGATAATGATAAGGTTCC
rJMSF039A08+ TTTGAAGTTGGGTTGGTCTGCTTCTAATTGTAAAGATTTGGATGATAATGATAAGGTTCC
____________________________________________________________
consensus TTTGAAGTTGGGTTGGTCTGCTTCTAATTGTAAAGATTTGGATGATAATGATAAGGTTCC
. : . : . : . : . : . :
rJMSF023L24+ TGTAACGCCTACCCCAGGCGGTTTATCAGCAAGTCCATTGCCAACAAACGAGCAGCAGAG
rJMSF027P23+ TGTAACGCCTACCCCAGGCGGTTTATCAGCAAGTCCATTGCCAACAAACGAGCAGCAGAG
rJMSF039A08+ TGTAACGCCTACCCCAGGCGGTTTATCAGCAAGTCCATTGCCAACAAACGAGCAGCAGAG
____________________________________________________________
consensus TGTAACGCCTACCCCAGGCGGTTTATCAGCAAGTCCATTGCCAACAAACGAGCAGCAGAG
. : . : . : . : . : . :
rJMSF023L24+ AACCCCCAACGGTCATGCAGTCGCCCCTGCCCTCGCTGGTAGGGCTCCTCCAAGACCATC
rJMSF027P23+ AACCCCCAACGGTCATGCAGTCGCCCCTGCCCTCGCTGGTAGGGCTCCTCCAAGACCATC
rJMSF039A08+ AACCCCCAACGGTCATGCAGTCGCCCCTGCCCTCGCTGGTAGGGCTCCTCCAAGACCATC
____________________________________________________________
consensus AACCCCCAACGGTCATGCAGTCGCCCCTGCCCTCGCTGGTAGGGCTCCTCCAAGACCATC
. : . : . : . : . : . :
rJMSF023L24+ TGCAGCATCACCTTGTACCATTCACTATCAGCATTGTACTCTGATTCTGATTCTGCTTAT
rJMSF027P23+ TGCAGCATCACCTTGTACCATTCACTATCAGCATTGTACTCTGATTCTGATTCTGCTTAT
rJMSF039A08+ TGCAGCATCACCTTGTACCATTCACTATCAGCATTGTACTCTGATTCTGATTCTGCTTAT
____________________________________________________________
consensus TGCAGCATCACCTTGTACCATTCACTATCAGCATTGTACTCTGATTCTGATTCTGCTTAT
. : . : . : . : . : . :
rJMSF023L24+ GCTACAATCATTCGTATGGTTATGTTGCCTGGTTTGATATCTGTGTGCTG
rJMSF027P23+ GCTACAATCATTCGTATGGTTATGTTGCCTGGTTTGATATCTGTGTGCTG
rJMSF039A08+ GCTACAATCATTCGTATGGTTATGTTGCCTGGTTTGATATCTGTGTGCTGGTGTATTTAT
____________________________________________________________
consensus GCTACAATCATTCGTATGGTTATGTTGCCTGGTTTGATATCTGTGTGCTGGTGTATTTAT