Contig 001441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007N24Sequence108006712 (3)717001441 (3)ref|XP_009629784.1|3e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF038O09Sequence609006712 (3)ref|XP_009764840.1|7e-16PREDICTED: telomere repeat-binding protein 5 isoform X2 [Nicotiana sylvestris]855001441 (3)ref|XP_009629784.1|1e-58PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r
JMSF046L03Sequence752006712 (3)ref|XP_009629784.1|2e-24PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r716001441 (3)ref|XP_007016385.1|6e-27TRF-like 2, putative isoform 1 [Theobroma cacao] gb|EOY34004.1| TRF-like 2, puta

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007N24+ TGCAGTGAATATGGCG
                      ____________________________________________________________
consensus TGCAGTGAATATGGCG
 
. : . : . : . : . : . :
rJMSF007N24+ GAGCCCCATGATGTGGTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
rJMSF038O09+ GTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
                      ____________________________________________________________
consensus GAGCCCCATGATGTGGTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
 
. : . : . : . : . : . :
rJMSF007N24+ ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
rJMSF038O09+ ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
                      ____________________________________________________________
consensus ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
 
. : . : . : . : . : . :
rJMSF007N24+ GGAACTGNCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
rJMSF046L03+ CAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACGCCCAAACATAGAAC
rJMSF038O09+ GGAACTGGCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
                      ____________________________________________________________
consensus GGAACTGGCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
 
. : . : . : . : . : . :
rJMSF007N24+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
rJMSF046L03+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
rJMSF038O09+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
                      ____________________________________________________________
consensus CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
 
. : . : . : . : . : . :
rJMSF007N24+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
rJMSF046L03+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
rJMSF038O09+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
                      ____________________________________________________________
consensus GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
 
. : . : . : . : . : . :
rJMSF007N24+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
rJMSF046L03+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
rJMSF038O09+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
                      ____________________________________________________________
consensus ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
 
. : . : . : . : . : . :
rJMSF007N24+ CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
rJMSF046L03+ CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
rJMSF038O09+ CCTCTGAGAAAACACCGTGCNTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
                      ____________________________________________________________
consensus CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
 
. : . : . : . : . : . :
rJMSF007N24+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
rJMSF046L03+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
rJMSF038O09+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
                      ____________________________________________________________
consensus TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
 
. : . : . : . : . : . :
rJMSF007N24+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
rJMSF046L03+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
rJMSF038O09+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
                      ____________________________________________________________
consensus AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
 
. : . : . : . : . : . :
rJMSF007N24+ AGGGGGGGTGGGGGGTGTGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
rJMSF046L03+ AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
rJMSF038O09+ AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
                      ____________________________________________________________
consensus AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
 
. : . : . : . : . : . :
rJMSF007N24+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
rJMSF046L03+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
rJMSF038O09+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
                      ____________________________________________________________
consensus TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
 
. : . : . : . : . : . :
rJMSF007N24+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCA
rJMSF046L03+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
rJMSF038O09+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
                      ____________________________________________________________
consensus TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
 
. : . : . : . : . : . :
rJMSF046L03+ ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
rJMSF038O09+ ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
                      ____________________________________________________________
consensus ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
 
. : . : . : . : . : . :
rJMSF046L03+ CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTC
rJMSF038O09+ CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTCCTGTGTA
                      ____________________________________________________________
consensus CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTCCTGTGTA