| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007N24 | Sequence | 108 | 006712 (3) | 717 | 001441 (3) | ref|XP_009629784.1| | 3e-58 | PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r | |||
| JMSF038O09 | Sequence | 609 | 006712 (3) | ref|XP_009764840.1| | 7e-16 | PREDICTED: telomere repeat-binding protein 5 isoform X2 [Nicotiana sylvestris] | 855 | 001441 (3) | ref|XP_009629784.1| | 1e-58 | PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r |
| JMSF046L03 | Sequence | 752 | 006712 (3) | ref|XP_009629784.1| | 2e-24 | PREDICTED: telomere repeat-binding protein 5-like [Nicotiana tomentosiformis] r | 716 | 001441 (3) | ref|XP_007016385.1| | 6e-27 | TRF-like 2, putative isoform 1 [Theobroma cacao] gb|EOY34004.1| TRF-like 2, puta |
This contig is upended
. : . : . : . : . : . :
rJMSF007N24+ TGCAGTGAATATGGCG
____________________________________________________________
consensus TGCAGTGAATATGGCG
. : . : . : . : . : . :
rJMSF007N24+ GAGCCCCATGATGTGGTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
rJMSF038O09+ GTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
____________________________________________________________
consensus GAGCCCCATGATGTGGTTCCGGTGAGGAAACCGAAGCGATCCGAGGCTGCACAACGCCGA
. : . : . : . : . : . :
rJMSF007N24+ ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
rJMSF038O09+ ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
____________________________________________________________
consensus ATTCGTCGACCTTTCTCTGTATCTGAAGTAGAAGCGCTTGTTCAAGCTGTCGAGAAGCTC
. : . : . : . : . : . :
rJMSF007N24+ GGAACTGNCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
rJMSF046L03+ CAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACGCCCAAACATAGAAC
rJMSF038O09+ GGAACTGGCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
____________________________________________________________
consensus GGAACTGGCAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGACAACG-CCAAACATAGAAC
. : . : . : . : . : . :
rJMSF007N24+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
rJMSF046L03+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
rJMSF038O09+ CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
____________________________________________________________
consensus CTATGTTGATTTGAAGGACAAATGGAAAACGCTAGTGCACACAGCGAGAATCTCCCCTCA
. : . : . : . : . : . :
rJMSF007N24+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
rJMSF046L03+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
rJMSF038O09+ GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
____________________________________________________________
consensus GCAGAGGAGAGGCGAGCCAGTGCCCCAGGAGCTCTTGGACCGCGTCCTAATTGCTCACGC
. : . : . : . : . : . :
rJMSF007N24+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
rJMSF046L03+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
rJMSF038O09+ ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
____________________________________________________________
consensus ATACTGGTCCCAGCAGCAAGCGAAGCAGCAGATGAAACAGCAGGCCGAGACGTGCCTTCT
. : . : . : . : . : . :
rJMSF007N24+ CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
rJMSF046L03+ CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
rJMSF038O09+ CCTCTGAGAAAACACCGTGCNTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
____________________________________________________________
consensus CCTCTGAGAAAACACCGTGCTTGCTTCACAACACCGGGTTTGGAGATGGTTGTTCTACGA
. : . : . : . : . : . :
rJMSF007N24+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
rJMSF046L03+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
rJMSF038O09+ TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
____________________________________________________________
consensus TTATCTCTCGTTACTCTGTACTATAACATCTGTAAAAAAAAAGTGCGACGGGGAAGTTAG
. : . : . : . : . : . :
rJMSF007N24+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
rJMSF046L03+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
rJMSF038O09+ AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
____________________________________________________________
consensus AACCTAGTAAAATGCAGTATGTATGTAGCTTCTTCACACAGTGATTTCTCTCATGCTGGG
. : . : . : . : . : . :
rJMSF007N24+ AGGGGGGGTGGGGGGTGTGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
rJMSF046L03+ AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
rJMSF038O09+ AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
____________________________________________________________
consensus AGGGGGGGTGGGGGGTGGGGTTGACATTACCTGTAAATAAGTGGTTGCTGACAGGGATTG
. : . : . : . : . : . :
rJMSF007N24+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
rJMSF046L03+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
rJMSF038O09+ TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
____________________________________________________________
consensus TTTCTGGTGCCAGGGCCTGGCATTTTACTTGATCAAAATAAGTGTTTTGTTCTTTTGGGG
. : . : . : . : . : . :
rJMSF007N24+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCA
rJMSF046L03+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
rJMSF038O09+ TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
____________________________________________________________
consensus TTTGGGTATTGTATTTACTGTGCCTAATATAGAAGAAAGGCAAAGCAAAGTGTAGAGCAT
. : . : . : . : . : . :
rJMSF046L03+ ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
rJMSF038O09+ ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
____________________________________________________________
consensus ATTATATATATGTTGTAAGCTTTGATTCAGCAGTTGAGAAACATCATCTGCTTAACTAAA
. : . : . : . : . : . :
rJMSF046L03+ CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTC
rJMSF038O09+ CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTCCTGTGTA
____________________________________________________________
consensus CCCCATTCTAATTGGGGGTTGGGTAGGCTGCATACTTTTGTATTTCTCCATTCCTGTGTA