Contig 001436:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF003M02+                                                                   CAA
                      ____________________________________________________________
consensus                                                                      CAA
 
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rJMSF003M02+          GGCACATGGTGGAGGGAAGAGATGCTCTTGGGGTCAGGCTGGTTCTGAATTTGGCATCGG
rJMSF037L19+           GCACATGGTGGAGGGAAGAGATGCTCTTGGGGTCAGGCTGGTTCTGAATTTGGCATCGG
                      ____________________________________________________________
consensus             GGCACATGGTGGAGGGAAGAGATGCTCTTGGGGTCAGGCTGGTTCTGAATTTGGCATCGG
 
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rJMSF003M02+          TGACGGTCCTTGTAACTCACTCGCTAGGGGGAAAACGGGGCTTTGTGCATCTCATGGTGC
rJMSF037L19+          TGACGGTCCTTGTAACTCACTCGCTAGGGGGAAAACGGGGCTTTGTGCATCTCATGGTGC
                      ____________________________________________________________
consensus             TGACGGTCCTTGTAACTCACTCGCTAGGGGGAAAACGGGGCTTTGTGCATCTCATGGTGC
 
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rJMSF003M02+          TCTGGTGCAGGACAAACGAGTTCATGGTGGAGCCACCATTGGAGTTATAGTCCAGGATAC
rJMSF037L19+          TCTGGTGCAGGACAAACGAGTTCATGGTGGAGCCACCATTGGAGTTATAGTCCAGGATAC
                      ____________________________________________________________
consensus             TCTGGTGCAGGACAAACGAGTTCATGGTGGAGCCACCATTGGAGTTATAGTCCAGGATAC
 
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rJMSF003M02+          AACACCCAACAAACCCAAGAAGTTGAACAATACTGTCACTCAAGACGACATGAACGTTGA
rJMSF037L19+          AACACCCAACAAACCCAAGAAGTTGAACAATACTGTCACTCAAGACGACATGAACGTTGA
                      ____________________________________________________________
consensus             AACACCCAACAAACCCAAGAAGTTGAACAATACTGTCACTCAAGACGACATGAACGTTGA
 
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rJMSF003M02+          TACCATAAAAATGGAGACGAGCGTGCTAACATCTCCAAACAGCTCTAGCGGGAAATGTTT
rJMSF037L19+          TACCATAAAAATGGAGACGAGCGTGCTAACATCTCCAAACAGCTCTAGCGGGAAATGTTT
                      ____________________________________________________________
consensus             TACCATAAAAATGGAGACGAGCGTGCTAACATCTCCAAACAGCTCTAGCGGGAAATGTTT
 
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rJMSF003M02+          AGCCAACCCGTCGGCATCAATAGCAGTGAGAGCTCCTGAAGGGAGGGTGCACGGTGGAAT
rJMSF037L19+          AGCCAACCCGTCGGCATCAATAGCAGTGAGAGCTCCTGAAGGGAGGGTGCACGGTGGAAT
                      ____________________________________________________________
consensus             AGCCAACCCGTCGGCATCAATAGCAGTGAGAGCTCCTGAAGGGAGGGTGCACGGTGGAAT
 
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rJMSF003M02+          TTTAATGGCATTGCTAAGAAACAATTCAGGTCTTAGTTTAGGCAACAACACGGGCATGGT
rJMSF037L19+          TTTAATGGCATTGCTAAGAAACAATTCAGGTCTTAGTTTAGGCAACAACACGGGCATGGT
                      ____________________________________________________________
consensus             TTTAATGGCATTGCTAAGAAACAATTCAGGTCTTAGTTTAGGCAACAACACGGGCATGGT
 
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rJMSF003M02+          GAATCCAGCAGAGCCAGGGAAAACATACACAGTATCTCAGAACTGGATGTAAGAAGGGAA
rJMSF037L19+          GAATCCAGCAGAGCCAGGGAAAACATACACAGTATCTCAGAACTGGATGTAAGAAGGGAA
                      ____________________________________________________________
consensus             GAATCCAGCAGAGCCAGGGAAAACATACACAGTATCTCAGAACTGGATGTAAGAAGGGAA
 
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rJMSF003M02+          TACTGAAGCCTCTGTCAATGCCCAATGGTCTTTTTGCTTTTCTTGTCCTATATTTCTGGA
rJMSF037L19+          TACTGAAGCCTCTGTCAATGCCCAATGGTCTTTTTGCTTTTCTTGTCCTATATTTCTGGA
                      ____________________________________________________________
consensus             TACTGAAGCCTCTGTCAATGCCCAATGGTCTTTTTGCTTTTCTTGTCCTATATTTCTGGA
 
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rJMSF003M02+          AGTGGTCTTCAGGACTCTTGTGTTTGTTACATCAAGGATGAACTTTAGTTAGTCTTACTC
rJMSF037L19+          AGTGGTCTTCAGGACTCTTGTGTTTGTTACATCAAGGATGAACTTTAGTTAGTCTTACTC
                      ____________________________________________________________
consensus             AGTGGTCTTCAGGACTCTTGTGTTTGTTACATCAAGGATGAACTTTAGTTAGTCTTACTC
 
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rJMSF003M02+          ATTTCCTTATTGTATATAGTTTTGTATTCTGTTATCGTTTTTATTTTGTGAATATTATAT
rJMSF037L19+          ATTTCCTTATTGTATATAGTTTTGTATTCTGTTATCGTTTTTATTTTGTGAATATTATAT
                      ____________________________________________________________
consensus             ATTTCCTTATTGTATATAGTTTTGTATTCTGTTATCGTTTTTATTTTGTGAATATTATAT
 
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rJMSF003M02+          AGTGTACCCTAAAGAACTGCTTACAATAAAG                             
rJMSF037L19+          AGTGTACCCTAAAGAACTGCTTACAATAAAGCTGTATTTGGCTTACCATGTAAGAATTTC
                      ____________________________________________________________
consensus             AGTGTACCCTAAAGAACTGCTTACAATAAAGCTGTATTTGGCTTACCATGTAAGAATTTC