Contig 001435:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037K09Sequence633006639 (135)gb|KJB08271.1|8e-132hypothetical protein B456_001G074300 [Gossypium raimondii]834001435 (2)gb|ABN49455.1|9e-19photosystem I chlorophyll a/b binding protein [Pisum sativum]
JMSF050O12Sequence641006639 (135)gb|KJB08271.1|2e-132hypothetical protein B456_001G074300 [Gossypium raimondii]852001435 (2)gb|ABN49455.1|9e-19photosystem I chlorophyll a/b binding protein [Pisum sativum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF050O12+ TAGGTTNTCCNNGCTGACTTAATCAGCCTAGTTGTCTATAANGNCTAGC
                      ____________________________________________________________
consensus TAGGTTNTCCNNGCTGACTTAATCAGCCTAGTTGTCTATAANGNCTAGC
 
. : . : . : . : . : . :
rJMSF050O12+ AAAACCCAGGAACTAGGTNATAGNTGTTCCCATTAGNAGTCAAGGACTTAAACCAGTNTA
                      ____________________________________________________________
consensus AAAACCCAGGAACTAGGTNATAGNTGTTCCCATTAGNAGTCAAGGACTTAAACCAGTNTA
 
. : . : . : . : . : . :
rJMSF050O12+ GGTTGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCACCTTAAACCAGCCTA
rJMSF037K09+ TGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCA-CNTAAACCAGCCTA
                      ____________________________________________________________
consensus GGTTGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCACCTTAAACCAGCCTA
 
. : . : . : . : . : . :
rJMSF050O12+ GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
rJMSF037K09+ GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
                      ____________________________________________________________
consensus GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
 
. : . : . : . : . : . :
rJMSF050O12+ GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
rJMSF037K09+ GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
                      ____________________________________________________________
consensus GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
 
. : . : . : . : . : . :
rJMSF050O12+ GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
rJMSF037K09+ GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
                      ____________________________________________________________
consensus GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
 
. : . : . : . : . : . :
rJMSF050O12+ CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
rJMSF037K09+ CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
                      ____________________________________________________________
consensus CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
 
. : . : . : . : . : . :
rJMSF050O12+ CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
rJMSF037K09+ CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
                      ____________________________________________________________
consensus CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
 
. : . : . : . : . : . :
rJMSF050O12+ GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
rJMSF037K09+ GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
                      ____________________________________________________________
consensus GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
 
. : . : . : . : . : . :
rJMSF050O12+ TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
rJMSF037K09+ TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
                      ____________________________________________________________
consensus TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
 
. : . : . : . : . : . :
rJMSF050O12+ CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
rJMSF037K09+ CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
                      ____________________________________________________________
consensus CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
 
. : . : . : . : . : . :
rJMSF050O12+ GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
rJMSF037K09+ GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
                      ____________________________________________________________
consensus GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
 
. : . : . : . : . : . :
rJMSF050O12+ CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
rJMSF037K09+ CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
                      ____________________________________________________________
consensus CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
 
. : . : . : . : . : . :
rJMSF050O12+ TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
rJMSF037K09+ TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
                      ____________________________________________________________
consensus TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
 
. : . : . : . : . : . :
rJMSF050O12+ TTTGTGTTGCTGTAAAAGGGACC
rJMSF037K09+ TTTGTGTTGCTGTAAAAGGGACCTTAATGTTTAATGTACCAGGAGTACTACATACGACAT
                      ____________________________________________________________
consensus TTTGTGTTGCTGTAAAAGGGACCTTAATGTTTAATGTACCAGGAGTACTACATACGACAT