Contig 001435:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037K09Sequence633006639 (135)gb|KJB08271.1|8e-132hypothetical protein B456_001G074300 [Gossypium raimondii]834001435 (2)gb|ABN49455.1|9e-19photosystem I chlorophyll a/b binding protein [Pisum sativum]
JMSF050O12Sequence641006639 (135)gb|KJB08271.1|2e-132hypothetical protein B456_001G074300 [Gossypium raimondii]852001435 (2)gb|ABN49455.1|9e-19photosystem I chlorophyll a/b binding protein [Pisum sativum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+                     TAGGTTNTCCNNGCTGACTTAATCAGCCTAGTTGTCTATAANGNCTAGC
                      ____________________________________________________________
consensus                        TAGGTTNTCCNNGCTGACTTAATCAGCCTAGTTGTCTATAANGNCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          AAAACCCAGGAACTAGGTNATAGNTGTTCCCATTAGNAGTCAAGGACTTAAACCAGTNTA
                      ____________________________________________________________
consensus             AAAACCCAGGAACTAGGTNATAGNTGTTCCCATTAGNAGTCAAGGACTTAAACCAGTNTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GGTTGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCACCTTAAACCAGCCTA
rJMSF037K09+             TGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCA-CNTAAACCAGCCTA
                      ____________________________________________________________
consensus             GGTTGTTCCTGACCGGCTTAAACCAGCCTAGGTTGTCCCTGACCACCTTAAACCAGCCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
rJMSF037K09+          GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
                      ____________________________________________________________
consensus             GTTTGTGTTGTCCCGGACCGGCTTAAACCAGCCTAGGTTGTCCCAAACCGGCTTAAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
rJMSF037K09+          GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
                      ____________________________________________________________
consensus             GCCTAGGTTGTCCCTAACCGGCTTAAACCAGCCTAAGTTGTGCCTAACCGGCTTAAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
rJMSF037K09+          GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
                      ____________________________________________________________
consensus             GGCTAGCCTAGGTTGTCCCTGACCGGCTTAAATCAGGCTAATTTGTCTATAGATGACTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
rJMSF037K09+          CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
                      ____________________________________________________________
consensus             CAAAAACCAAGAAACTAGGTTAATAGGCTGCTCCAACTGGAAGTCAAGGACTTGAACTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
rJMSF037K09+          CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
                      ____________________________________________________________
consensus             CCTAGGTTGTCCCTAACCGTCTTAAACCAGTCTAGATTACCTATAGCAAAAACTAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
rJMSF037K09+          GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
                      ____________________________________________________________
consensus             GTCAATAGGTCGTTAGCTCCAGCTGGAAGTCAAGCCTTGATTACCAAGTAACAGTATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
rJMSF037K09+          TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
                      ____________________________________________________________
consensus             TAATTTGATGGGTTACCCCAATGCAGCCTATCTATGAAAATTGTGTAACTTGTGGGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
rJMSF037K09+          CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
                      ____________________________________________________________
consensus             CTGTTTTGCAGGGAGATTGGCGATGTTGGCGTTTCTTGGATTCATAGTGCAGCACAACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
rJMSF037K09+          GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
                      ____________________________________________________________
consensus             GACCGGCAAGGGTCCATTCGACAACCTGCTGCAGCATCTGTCAGACCCATGGCACAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
rJMSF037K09+          CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
                      ____________________________________________________________
consensus             CATTGTGCAAACACTGGGTCAGTGAGGGGCTTAAGGTTGATGGAAACCAGAGGGAAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
rJMSF037K09+          TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
                      ____________________________________________________________
consensus             TTGTTTATGTTGTTGTAACCATGAATAGGGCACTGGTTCTTCAGATCAAGAATTTGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050O12+          TTTGTGTTGCTGTAAAAGGGACC                                     
rJMSF037K09+          TTTGTGTTGCTGTAAAAGGGACCTTAATGTTTAATGTACCAGGAGTACTACATACGACAT
                      ____________________________________________________________
consensus             TTTGTGTTGCTGTAAAAGGGACCTTAATGTTTAATGTACCAGGAGTACTACATACGACAT