Contig 001434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015N03Sequence492002173 (2)ref|XP_009771164.1|4e-44PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ni653001434 (2)gb|AES75162.2|3e-04RNA polymerase II-binding domain protein [Medicago truncatula]
JMSF037J07Sequence681002173 (2)ref|XP_006352321.1|2e-79PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [So760001434 (2)ref|XP_004250299.1|3e-09PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [So

Alignment

This contig is upended


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rJMSF037J07+                              GGCTGCTGCCTNTATGAGCAGTGGCTNGAAAGAGGATTTT
                      ____________________________________________________________
consensus                                 GGCTGCTGCCTNTATGAGCAGTGGCTNGAAAGAGGATTTT
 
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rJMSF037J07+          TTCCAANTTACCTTACGGTTCTCCAGAGAAGAGGCCCAAGNTGGACAATCCGACGACTTT
                      ____________________________________________________________
consensus             TTCCAANTTACCTTACGGTTCTCCAGAGAAGAGGCCCAAGNTGGACAATCCGACGACTTT
 
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rJMSF015N03+             TGATATGAATAAAGCAGATGGAGGTGGTTCCGCNTATTTCTCTACAGGCATGCAATC
rJMSF037J07+          TTNTGATATGAATAAAGCAGATGGAGGTGGTTCCGCCTATTTCTNTACAGGCATGCAATC
                      ____________________________________________________________
consensus             TTNTGATATGAATAAAGCAGATGGAGGTGGTTCCGCCTATTTCTCTACAGGCATGCAATC
 
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rJMSF015N03+          CTTGCCCCAGACAAATCCTATGCCCGGTGCATTCCCTCCACCACCGNCCCCACCANCCAT
rJMSF037J07+          CTTGCCCCAGACAAATCCTATGCCCGCTGCATTCCCTCCACCACCGCCCCCACCACCCAT
                      ____________________________________________________________
consensus             CTTGCCCCAGACAAATCCTATGCCCGGTGCATTCCCTCCACCACCGCCCCCACCACCCAT
 
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rJMSF015N03+          ACNTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
rJMSF037J07+          ACCTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
                      ____________________________________________________________
consensus             ACCTCCGGCAAATTCCCCTCCAAGTCAATTGGTTCAATCAGCAGCTATGATGATGGGCGT
 
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rJMSF015N03+          TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
rJMSF037J07+          TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
                      ____________________________________________________________
consensus             TTTACCCTATGGGTATGGTTCTGCCGTTAGCCTCCCACCCCCACCTATGCCCATCTCAAC
 
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rJMSF015N03+          AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
rJMSF037J07+          AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
                      ____________________________________________________________
consensus             AGGACTGACAAGGCCGCCACCACTTCAACCTCCTCAGCAGCTGCAAATCCCGCAGTCCCA
 
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rJMSF015N03+          TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
rJMSF037J07+          TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
                      ____________________________________________________________
consensus             TTCTCAGCAACAGCAGCAACAGCCTATCAGTGGCGGTTTCTATCCGCCCCCCGGATTCGG
 
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rJMSF015N03+          TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
rJMSF037J07+          TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
                      ____________________________________________________________
consensus             TTTCTATGGACAGAGCCCTCAGACAACACCACCTCCTGTTCCCAGGCAATAAGCCCTTTT
 
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rJMSF015N03+          GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
rJMSF037J07+          GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
                      ____________________________________________________________
consensus             GAGAAATATGAAAATCCCTTGTGATTTTGTACATTAATATGAAGTCTCATCTAGACAGAG
 
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rJMSF015N03+          GAAGTGTTTTAATNTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
rJMSF037J07+          GAAGTGTTTTAATCTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
                      ____________________________________________________________
consensus             GAAGTGTTTTAATCTAGTTTTTACCTTTCACCTCTCAATCCTACCCCCCATTCCCTCAAA
 
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rJMSF015N03+          CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
rJMSF037J07+          CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
                      ____________________________________________________________
consensus             CAGATGAAAGTAGCTTTCTGCATGAACTCCCTGTTTGCACCCTCTGTACTAACCGTTAGG
 
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rJMSF015N03+          GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAATCAGTTGGTATAGGACT    
rJMSF037J07+          GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAACCAGTTGGTATAGGACTTTGT
                      ____________________________________________________________
consensus             GTGCTTTGCTACAGTAAGGATACATGTACCTATCTGTAATCAGTTGGTATAGGACTTTGT