Contig 001432:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037C24Sequence705013233 (3)ref|NP_001234586.1|3e-62TCP transcription factor 16 [Solanum lycopersicum] gb|ADM87265.1| TCP transcript586001432 (2)ref|XP_006364185.1|1e-12PREDICTED: transcription factor TCP14-like [Solanum tuberosum]
JMSF048B18Sequence662013233 (3)gb|KDP31238.1|2e-35hypothetical protein JCGZ_11614 [Jatropha curcas]773001432 (2)gb|KJB39903.1|2e-34hypothetical protein B456_007G036800 [Gossypium raimondii]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+                                                        GAGCCGACGACGGC
                      ____________________________________________________________
consensus                                                           GAGCCGACGACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          GGAGGAAGAGAGCATAAGCCGGAAGCGGCGGTCNGAGCAAGATTTACAACACCAAATGGG
                      ____________________________________________________________
consensus             GGAGGAAGAGAGCATAAGCCGGAAGCGGCGGTCNGAGCAAGATTTACAACACCAAATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          GAGTTATCTCCTGCAGTCCAGTGCAGGGACGATGCCGGCGAGCCACGCTTCCGTGCCGGC
                      ____________________________________________________________
consensus             GAGTTATCTCCTGCAGTCCAGTGCAGGGACGATGCCGGCGAGCCACGCTTCCGTGCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          CAATTTCTGGATGGTAACCAATTCAACAAACCCCGTCATGGGCGGGGCCGCCGGCGATCC
                      ____________________________________________________________
consensus             CAATTTCTGGATGGTAACCAATTCAACAAACCCCGTCATGGGCGGGGCCGCCGGCGATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          AATATGGACGTTTCCGTCCGTTAGTAACAACGCCGCCGCTGCCGCCGCGGCGTTGTATAG
rJMSF037C24+                       CCGTCCGTTAGTAACAACGCCGCCGCTGCCGCCGCGGCGTTGTATAG
                      ____________________________________________________________
consensus             AATATGGACGTTTCCGTCCGTTAGTAACAACGCCGCCGCTGCCGCCGCGGCGTTGTATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          AGGCACGATGTCCAGTGGGTTGCATTTTATGAATTTTCCCACGCCGGTGGCGCTGCTGCC
rJMSF037C24+          AGGCACGATGTCCAGTGGGTTGCATTTTATGAATTTTCCCACGCCGGTGGCGCTGCTGCC
                      ____________________________________________________________
consensus             AGGCACGATGTCCAGTGGGTTGCATTTTATGAATTTTCCCACGCCGGTGGCGCTGCTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          TAGTCAGCAACTCGGCACCAATATTGGCGGCGGTGGCGGCGGAAATGGGATGGGAGAAGG
rJMSF037C24+          TAGTCAGCAACTCGGCACCAGTATTGGCGGCGGTGGCGGCGGAAATGGGATGGGAGAAGG
                      ____________________________________________________________
consensus             TAGTCAGCAACTCGGCACCAGTATTGGCGGCGGTGGCGGCGGAAATGGGATGGGAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          GCAGTTAGGCATGTTCGCCGGGCTAAACCCGTATCATCGCTCCGACGGCGGCGGCGGAGT
rJMSF037C24+          GCAGTTAGGCATGTTCGCCGGGCTAAACCCGTATCATCGCTCCGGCGGCGGCGGCGGAGT
                      ____________________________________________________________
consensus             GCAGTTAGGCATGTTCGCCGGGCTAAACCCGTATCATCGCTCCGGCGGCGGCGGCGGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          ATCTGAATCTCAGGCCAGTGGCTCTCATTCACACCACGGCGGGGATGATCGGCACGACAC
rJMSF037C24+          ATCTGAATCTCAGGCCAGTGGCTCTCATTCACACCACGGCGGGGATGATCGGCACGACAC
                      ____________________________________________________________
consensus             ATCTGAATCTCAGGCCAGTGGCTCTCATTCACACCACGGCGGGGATGATCGGCACGACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          CACAAGTTAACATTCACCGAGTCATGAGACGATATTCATCGGAATTCATGAAGCAATTCA
rJMSF037C24+          CACAAGTTAACATTCACCGAGTCATGAGACGATATTCATCGGAATTCATGAAGCAATTCA
                      ____________________________________________________________
consensus             CACAAGTTAACATTCACCGAGTCATGAGACGATATTCATCGGAATTCATGAAGCAATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          TCAATCCCTCCACTTATGTTGTGTAGTTTGGATGTTTAAACACACACGTGAGGTTTGATT
rJMSF037C24+          TCAATCCCTCCACTTATGTTGTGTAGTTTGGATGTTTAAACACACACGTGAGGTTTGATT
                      ____________________________________________________________
consensus             TCAATCCCTCCACTTATGTTGTGTAGTTTGGATGTTTAAACACACACGTGAGGTTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          AATTATTTTCTCTCAAATTTCTGTTTCTTTTTGTTTCTTTTTCTTTTCTTTTCTTTCTTT
rJMSF037C24+          AATTATTTTCTCTCAAATTTCTGTTTCTTTTTGTTTCTTTTTCTTTTCTTTTCTTTCTTT
                      ____________________________________________________________
consensus             AATTATTTTCTCTCAAATTTCTGTTTCTTTTTGTTTCTTTTTCTTTTCTTTTCTTTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          CTTTCTTTCTTGCTTAATTCCCTCTGATTTTTATTCTTTTTTTTTCCCCTTAATTTTCTT
rJMSF037C24+          CTTTCTTTCTTGCTTAATTCCCTCTGATTTTTATTC-TTTTTTTTCCCCTTAATTTTCTT
                      ____________________________________________________________
consensus             CTTTCTTTCTTGCTTAATTCCCTCTGATTTTTATTCTTTTTTTTTCCCCTTAATTTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048B18+          GTGTGATTAGTATGCCTGCCGGTTTTAAGGTT                            
rJMSF037C24+          GTGTGATTAGTATGCCTGCCGGTTTTAAGGTTTGGAGAAGGCAAGAGACTGAATATCATT
                      ____________________________________________________________
consensus             GTGTGATTAGTATGCCTGCCGGTTTTAAGGTTTGGAGAAGGCAAGAGACTGAATATCATT