Contig 001431:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006L02Sequence439000743 (45)ref|XP_009780936.1|7e-69PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico479001431 (3)emb|CDP04652.1|5e-05unnamed protein product [Coffea canephora]
JMSF010L03Sequence324013275 (4)ref|XP_009629140.1|1e-36PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)
JMSF037B15Sequence682013275 (4)ref|XP_009629140.1|7e-129PREDICTED: histone deacetylase 19 [Nicotiana tomentosiformis]750001431 (3)

Alignment

This contig is upended


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rJMSF010L03+                                             ATGAGCCCTTTAGTCTGAAAGAGTG
rJMSF037B15+                                       TAAACCATGAGCCCTTTAGTCTGAAAGAGTG
                      ____________________________________________________________
consensus                                          TAAACCATGAGCCCTTTAGTCTGAAAGAGTG
 
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rJMSF010L03+          TTTCGTGGNTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
rJMSF037B15+          TTTCGTGGTTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
                      ____________________________________________________________
consensus             TTTCGTGGTTGTAAGTCTTTATCATGTACTATATTCTTATATAAGAAATATAACTCGCAT
 
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rJMSF010L03+          TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
rJMSF037B15+          TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
                      ____________________________________________________________
consensus             TTTATAATTTGTTTTACTAAAATTCTGTGAAGAGGTTGAATGAGGTTTAGGAGACACTGT
 
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rJMSF010L03+          TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
rJMSF037B15+          TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
                      ____________________________________________________________
consensus             TAAATTAGATCTGTGTGGCCCTCTTTTCCTCTTTCCACACATCCACTGCAGGATAACTGG
 
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rJMSF010L03+          GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
rJMSF006L02+                                                           GGACGAAATGA
rJMSF037B15+          GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
                      ____________________________________________________________
consensus             GCTAATATGTAGATGACAACACGGTTTCTTGTTTCCATTTGAATTTTCAGGACGAAATGA
 
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rJMSF010L03+          AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
rJMSF006L02+          AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
rJMSF037B15+          AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
                      ____________________________________________________________
consensus             AAATTGATGAACGCCCAAGAGAAGCAGACATGGCATTAGAACCAAACATGAAGGGATCAA
 
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rJMSF010L03+          GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
rJMSF006L02+          GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
rJMSF037B15+          GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
                      ____________________________________________________________
consensus             GTTCAGCAGTGGCGGAAGAACACCACATGGCGGGGAACTCAAGCAAGCCATTTAGTCAAC
 
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rJMSF010L03+          CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
rJMSF006L02+          CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
rJMSF037B15+          CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
                      ____________________________________________________________
consensus             CAATGGATATGAATTTATGAATCAAACCTAGTAGACCACTACCTTCCCAGAAAACAGTAT
 
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rJMSF010L03+          GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
rJMSF006L02+          GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
rJMSF037B15+          GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
                      ____________________________________________________________
consensus             GATGTGCAAATCAATTCCTCTAAACTGTCACTTCAGGTATTGAATGGAGAAGCTGTTCTT
 
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rJMSF010L03+          GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
rJMSF006L02+          GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
rJMSF037B15+          GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
                      ____________________________________________________________
consensus             GTCATGTCTATACTCTATATTATATGTATGTGTTCATGCTCTATAACTCTTCGGGGGTAA
 
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rJMSF010L03+          ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
rJMSF006L02+          ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
rJMSF037B15+          ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
                      ____________________________________________________________
consensus             ATCTGGTTTTAACTAACAATTTTCCCTCGAGTGTATAAAGGCAGTTGAAACACTGATTCA
 
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rJMSF010L03+          TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
rJMSF006L02+          TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
rJMSF037B15+          TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
                      ____________________________________________________________
consensus             TCCTTGTAGATCGAGAGTCAACAATTGTTGTATTCATCAGTGTTGAGTTCGAATCTAATC
 
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rJMSF010L03+          CCATATCCCCTTTTACCTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGT    
rJMSF006L02+          CCAT                                                        
rJMSF037B15+          CCATATCCCCTTTTA-CTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGTTGTC
                      ____________________________________________________________
consensus             CCATATCCCCTTTTACCTTGGATAGTCTAATGTACCCTATATTTGCAGCAGTAAGTTGTC