Contig 001430:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036J12Sequence686010893 (3)ref|XP_007044801.1|1e-62Octicosapeptide/Phox/Bem1p family protein isoform 1 [Theobroma cacao] ref|XP_00148001430 (2)
JMSF046I15Sequence743010893 (3)ref|XP_007044801.1|9e-72Octicosapeptide/Phox/Bem1p family protein isoform 1 [Theobroma cacao] ref|XP_00141001430 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046I15+                                                 AATTTGGGGCCCCAAATNCCA
rJMSF036J12+                                          TCNAAGNAATTTGGGGCCCCAAATNCCA
                      ____________________________________________________________
consensus                                             TCNAAGNAATTTGGGGCCCCAAATNCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046I15+          AAAAAAAAAGAAAAAGAAAGCTCNAAAGAAGGATGAAATGATGATAATGATATATNTGAT
rJMSF036J12+          AAAAAAAAAGAAAAAGAAAGCTCAAAAGAAGGNTGAAATGATGATAATGATATATNTGAT
                      ____________________________________________________________
consensus             AAAAAAAAAGAAAAAGAAAGCTCAAAAGAAGGATGAAATGATGATAATGATATATNTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046I15+          GTAAGAAGTGCATGTAAATCTTTAAGAAGGGATTGGTTTTTTTTTTGT            
rJMSF036J12+          GTAAGAAGNGCNTGTAAATCTTTAAGAAGGGATTGGTTTTTTTTTTGTTAATCCATCCTC
                      ____________________________________________________________
consensus             GTAAGAAGTGCATGTAAATCTTTAAGAAGGGATTGGTTTTTTTTTTGTTAATCCATCCTC