Contig 001429:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028D18Sequence645002286 (3)ref|XP_009631111.1|2e-34PREDICTED: transcription factor bHLH3 [Nicotiana tomentosiformis] ref|XP_0096311728001429 (2)ref|XP_006352746.1|2e-62PREDICTED: transcription factor bHLH3-like isoform X1 [Solanum tuberosum] ref|X
JMSF036E20Sequence636002286 (3)ref|XP_009631111.1|1e-35PREDICTED: transcription factor bHLH3 [Nicotiana tomentosiformis] ref|XP_0096311724001429 (2)ref|XP_006352746.1|7e-59PREDICTED: transcription factor bHLH3-like isoform X1 [Solanum tuberosum] ref|X

Alignment

This contig is upended


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rJMSF028D18+                                                     ACTGAACCATGTGGAAG
rJMSF036E20+                                                                  GAAG
                      ____________________________________________________________
consensus                                                        ACTGAACCATGTGGAAG
 
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rJMSF028D18+          CCGAGAGGCAGAGGCGCGAGAAGCTTAACCAGCGGTTTTTTGCACTTAGAGCCGTTGTTC
rJMSF036E20+          CCGAGAGGCAGAGGCGCGAGAAGCTTAACCAGCGGTTTTTTGCACTTAGAGCCGTTGTTC
                      ____________________________________________________________
consensus             CCGAGAGGCAGAGGCGCGAGAAGCTTAACCAGCGGTTTTTTGCACTTAGAGCCGTTGTTC
 
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rJMSF028D18+          CAAATATCTCGAAGATGGATAAAGCATCTCTGCTTGGGGACGCAATTGCGTACATCACCG
rJMSF036E20+          CAAATATCTCGAAGATGGATAAAGCATCTCTGCTTGGGGACGCAATTGCGTACATCACCG
                      ____________________________________________________________
consensus             CAAATATCTCGAAGATGGATAAAGCATCTCTGCTTGGGGACGCAATTGCGTACATCACCG
 
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rJMSF028D18+          ACCTCCAGGCAAGAATTAGGGCCATGGAAGCCGAGGAGGAGACGAAAGACGGTCCACAAA
rJMSF036E20+          ACCTCCAGGCAAGAATTAGGGCCATGGAAGCCGAGGAGGAGACGAAAGACGGTCCACAAA
                      ____________________________________________________________
consensus             ACCTCCAGGCAAGAATTAGGGCCATGGAAGCCGAGGAGGAGACGAAAGACGGTCCACAAA
 
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rJMSF028D18+          GGCAGAATGGTGTCCCGGATATTGATTTTTGTCAGAGACGCGATGATGCAGTGATAAGAA
rJMSF036E20+          GGCAGAATGGTGTCCCGGATATTGATTTTTGTCAGAGACGCGATGATGCAGTGATAAGAA
                      ____________________________________________________________
consensus             GGCAGAATGGTGTCCCGGATATTGATTTTTGTCAGAGACGCGATGATGCAGTGATAAGAA
 
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rJMSF028D18+          TAGGCTGCTCTTTGGATGCTCATCCGGTTTCGAGAGTCGTAAAGGCATTTAGACAACATC
rJMSF036E20+          TAGGCTGCTCTTTGGATGCTCATCCGGTTTCGAGAGTCGTAAAGGCATTTAGACAACATC
                      ____________________________________________________________
consensus             TAGGCTGCTCTTTGGATGCTCATCCGGTTTCGAGAGTCGTAAAGGCATTTAGACAACATC
 
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rJMSF028D18+          AGGTAATGGCAGATGAATCTAGCGTTTCGGTGACTGAAAACGACGAGGTTGTTCACACTT
rJMSF036E20+          AGGTAATGGCAGATGAATCTAGCGTTTCGGTGACTGAAAACGACGAGGTTGTTCACACTT
                      ____________________________________________________________
consensus             AGGTAATGGCAGATGAATCTAGCGTTTCGGTGACTGAAAACGACGAGGTTGTTCACACTT
 
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rJMSF028D18+          TCTCTATCCGGGCTCAAGGTGCTGCTGTCGAACAGCTCAAGGAAAAGCTGGCCGCTTCTC
rJMSF036E20+          TCTCTATCCGGGCTCAAGGTGCTGCTGTCGAACAGCTCAAGGAAAAGCTGGCCGCTTCTC
                      ____________________________________________________________
consensus             TCTCTATCCGGGCTCAAGGTGCTGCTGTCGAACAGCTCAAGGAAAAGCTGGCCGCTTCTC
 
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rJMSF028D18+          TTTCCCTGTGATTCCACCGTGTTTGTAGTACAATAACTGATCGGCTCAAACCAAGAAGGT
rJMSF036E20+          TTTCCCTGTGATTCCACCGTGTTTGTAGTACAATAACTGATCGGCTCAAACCAAGAAGGT
                      ____________________________________________________________
consensus             TTTCCCTGTGATTCCACCGTGTTTGTAGTACAATAACTGATCGGCTCAAACCAAGAAGGT
 
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rJMSF028D18+          CAATAGGCAGCTCCGACCGAAAGTTGAACTTGTAACCTAGCTTGGTGGGGATTGCTCCCA
rJMSF036E20+          CAATAGGCAGCTCCGACCGAAAGTTGAACTTGTAACCTAGCTTGGTGGGGATTGCTCCCA
                      ____________________________________________________________
consensus             CAATAGGCAGCTCCGACCGAAAGTTGAACTTGTAACCTAGCTTGGTGGGGATTGCTCCCA
 
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rJMSF028D18+          AAATTTATTTTTTTTAAAAAAAATTGATTCTCTGTATTATAAAATGTTTGGTTAGAGCAA
rJMSF036E20+          AAATTTATTTTTTTTAAAAAAAATTGATTCTCTGTATTATAAAATGTTTGGTTAGAGCAA
                      ____________________________________________________________
consensus             AAATTTATTTTTTTTAAAAAAAATTGATTCTCTGTATTATAAAATGTTTGGTTAGAGCAA
 
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rJMSF028D18+          CATAACATCTTTATGTTTAAGGTGTGCCATGGAAGATGAGAGTTGGAGATAACAGAGATG
rJMSF036E20+          CATAACATCTTTATGTTTAAGGTGTGCCATGGAAGATGAGAGTTGGAGATAACAGAGATG
                      ____________________________________________________________
consensus             CATAACATCTTTATGTTTAAGGTGTGCCATGGAAGATGAGAGTTGGAGATAACAGAGATG
 
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rJMSF028D18+          AGACAGATATATCTAAAGAGATAGAATTTATCTGCTTTCCCTTTTCCTATT         
rJMSF036E20+          AGACAGATATATCTAAAGAGATAGAATTTATCTGCTTTCCCTTTTCCTATTCATATGAAC
                      ____________________________________________________________
consensus             AGACAGATATATCTAAAGAGATAGAATTTATCTGCTTTCCCTTTTCCTATTCATATGAAC