Contig 001425:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001N06Sequence354006340 (2)ref|XP_009603110.1|2e-11PREDICTED: dnaJ homolog subfamily A member 2 [Nicotiana tomentosiformis]717001425 (2)emb|CDO98167.1|2e-60unnamed protein product [Coffea canephora]
JMSF035F13Sequence669006340 (2)ref|XP_009603110.1|2e-73PREDICTED: dnaJ homolog subfamily A member 2 [Nicotiana tomentosiformis]724001425 (2)emb|CDO98167.1|2e-59unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF001N06+                                                                  ATCG
rJMSF035F13+                                                                  ATCG
                      ____________________________________________________________
consensus                                                                     ATCG
 
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rJMSF001N06+          AAGAGATACCAGAGATTCAAAGAGATGGCATAAATCTAATGTCAACAATTTCAATTAGTT
rJMSF035F13+          AAGAGATACCAGAGATTCAAAGAGATGGCATAAATNTAATGTCAACAATTTCAATTAGTT
                      ____________________________________________________________
consensus             AAGAGATACCAGAGATTCAAAGAGATGGCATAAATCTAATGTCAACAATTTCAATTAGTT
 
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rJMSF001N06+          ATCTCGATGCGATTCTGGGAACTGTTGTCAAGGTTAAAACAGTTGAAGGTACAACTGAAC
rJMSF035F13+          ATCTCGATGCGATTCTGGGAACTGTTGTCAAGGTTAAAACAGTTGAAGGTACAACTGAAC
                      ____________________________________________________________
consensus             ATCTCGATGCGATTCTGGGAACTGTTGTCAAGGTTAAAACAGTTGAAGGTACAACTGAAC
 
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rJMSF001N06+          TCCAGATTCCTCCTGGTACTCAACCTAGCGATGTTCTTGTCTTGGCAAGAAAAGGTGCCC
rJMSF035F13+          TCCAGATTCCTCCTGGTACTCAACCTAGCGATGTTCTTGTCTTGGCAAGAAAAGGTGCCC
                      ____________________________________________________________
consensus             TCCAGATTCCTCCTGGTACTCAACCTAGCGATGTTCTTGTCTTGGCAAGAAAAGGTGCCC
 
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rJMSF001N06+          CTAAACTGAATAAGCCCTCAATACGTGGTGATCATTTGTTCACAATAAAAGTTAGTATAC
rJMSF035F13+          CTAAACTGAATAAGCCCTCAATACGTGGTGATCATTTGTTCACAATAAAAGTTAGTATAC
                      ____________________________________________________________
consensus             CTAAACTGAATAAGCCCTCAATACGTGGTGATCATTTGTTCACAATAAAAGTTAGTATAC
 
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rJMSF001N06+          CAAAGCGTGTCAGTGCAAAGGAACGTGAGTTGCTTGAGGAACTTGCTTCATTGAATGGCA
rJMSF035F13+          CAAAGCGTGTCAGTGCAAAGGAACGTGAGTTGCTTGAGGAACTTGCTTCATTGAATGGCA
                      ____________________________________________________________
consensus             CAAAGCGTGTCAGTGCAAAGGAACGTGAGTTGCTTGAGGAACTTGCTTCATTGAATGGCA
 
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rJMSF001N06+          GCCCAATTGCTCGGACTAAAACTCAGCCCAAGGTTCAGCAAGCTGCTAGAAGTACAGAAA
rJMSF035F13+          GCCCAATTGCTCGGACTAAAACTCAGCCCAAGGTTCAGCAAGCTGCTAGAAGTACAGAAA
                      ____________________________________________________________
consensus             GCCCAATTGCTCGGACTAAAACTCAGCCCAAGGTTCAGCAAGCTGCTAGAAGTACAGAAA
 
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rJMSF001N06+          CAAAAATTGATTCTGATTCTGGTACAGAGAAAAGTGATGAATCCGAAGACACAGATGACG
rJMSF035F13+          CAAAAATTGATTCTGATTCTGGTACAGAGAAAAGTGATGAATCCGAAGACACAGATGACG
                      ____________________________________________________________
consensus             CAAAAATTGATTCTGATTCTGGTACAGAGAAAAGTGATGAATCCGAAGACACAGATGACG
 
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rJMSF001N06+          TCTGGAAAAAGTTAAAAGATTTTGCTGGGTCTGTTGCAAATGGTGCTCTGAAGTGGTTTA
rJMSF035F13+          TCTGGAAAAAGTTAAAAGATTTTGCTGGGTCTGTTGCAAATGGTGCTCTGAAGTGGTTTA
                      ____________________________________________________________
consensus             TCTGGAAAAAGTTAAAAGATTTTGCTGGGTCTGTTGCAAATGGTGCTCTGAAGTGGTTTA
 
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rJMSF001N06+          AAGACAACCTCTGATGGAATGCATCAACATAGCCCCATTTCTTCATTAACCTCACAGGAT
rJMSF035F13+          AAGACAACCTCTGATGGAATGCATCAACATAGCCCCATTTCTTCATTAACCTCACAGGAT
                      ____________________________________________________________
consensus             AAGACAACCTCTGATGGAATGCATCAACATAGCCCCATTTCTTCATTAACCTCACAGGAT
 
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rJMSF001N06+          TCAGGATGATGCGTGGAGCAGTTTTCTTTAGATTGAGTTGTGTCAACCCTTTGGGGTAAT
rJMSF035F13+          TCAGGATGATGCGTGGAGCAGTTTTCTTTAGATTGAGTTGTGTCAACCCTTTGGGGTAAT
                      ____________________________________________________________
consensus             TCAGGATGATGCGTGGAGCAGTTTTCTTTAGATTGAGTTGTGTCAACCCTTTGGGGTAAT
 
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rJMSF001N06+          TGATTTTCCCACCAACCATTCCTGTAAATTCCAACAATGGCTCAGCCATCCCAGCAAGAG
rJMSF035F13+          TGATTTTCCCACCAACCATTCCTGTAAATTCCAACAATGGCTCAGCCATCCCAGCAAGAG
                      ____________________________________________________________
consensus             TGATTTTCCCACCAACCATTCCTGTAAATTCCAACAATGGCTCAGCCATCCCAGCAAGAG
 
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rJMSF001N06+          GTGTTATTACTCATTTCCACCATTTGTGACTGAGATGTGTAC                  
rJMSF035F13+          GTGTTATTACTCATTTCCACCATTTGTGACTGAGATGTGTACCATGTACAGGAGGGAACC
                      ____________________________________________________________
consensus             GTGTTATTACTCATTTCCACCATTTGTGACTGAGATGTGTACCATGTACAGGAGGGAACC