| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF033K24 | Sequence | 738 | 013380 (3) | ref|XP_004236571.1| | 7e-110 | PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosph | 680 | 001421 (3) | ref|XP_009784799.1| | 4e-37 | PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosph |
| JMSF033O01 | Sequence | 673 | 013380 (3) | ref|XP_004236571.1| | 6e-94 | PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosph | 731 | 001421 (3) | ref|NP_001274821.1| | 5e-52 | UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferas |
| JMSF035O01 | Sequence | 581 | 024233 | ref|WP_034127371.1| | 2e-127 | hypothetical protein [Pseudomonas fluorescens] | 247 | 001421 (3) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF033O01+ TTTCTTACAACTGGTATCC
____________________________________________________________
consensus TTTCTTACAACTGGTATCC
. : . : . : . : . : . :
rJMSF033O01+ TTCTTCGGTTTTTGTTGGTGACACCTTCACCTACTTTGCTGGAATGACTATGGCAGTAGC
rJMSF033K24+ GGAATGACTATGGCAGTAGC
____________________________________________________________
consensus TTCTTCGGTTTTTGTTGGTGACACCTTCACCTACTTTGCTGGAATGACTATGGCAGTAGC
. : . : . : . : . : . :
rJMSF033O01+ TGGCATTTTGGGTCACTTTAGTGAAACACTTCTGATATTCTTTACACCTCAAGTTTTGAA
rJMSF033K24+ TGGCATTTTGGGTCACTTTAGTGAAACACTTCTGATATTCTTTACACCTCAAGTTTTGAA
____________________________________________________________
consensus TGGCATTTTGGGTCACTTTAGTGAAACACTTCTGATATTCTTTACACCTCAAGTTTTGAA
. : . : . : . : . : . :
rJMSF033O01+ CTTTTTGCTGTCAGTCCCTCAGCTAGCTGGTATTATCCCTTGTCCACGGCATCGACTGCC
rJMSF033K24+ CTTTTTGCTGTCAGTCCCTCAGCTAGCTGGTATTATCCCTTGTCCACGGCATCGACTGCC
____________________________________________________________
consensus CTTTTTGCTGTCAGTCCCTCAGCTAGCTGGTATTATCCCTTGTCCACGGCATCGACTGCC
. : . : . : . : . : . :
rJMSF033O01+ TAAATTTGATCCTCAGACTGGTTTACTAACTGGTACAAATGATGGAACATTGGTAAACTT
rJMSF033K24+ TAAATTTGATCCTCAGACTGGTTTACTAACTGGTACAAATGATGGAACATTGGTAAACTT
____________________________________________________________
consensus TAAATTTGATCCTCAGACTGGTTTACTAACTGGTACAAATGATGGAACATTGGTAAACTT
. : . : . : . : . : . :
rJMSF033O01+ CTTCTTAAGACAACTTGGCAGAATGTCAGAACAGTCCCTTTGCGTTGTATTACTACTTTT
rJMSF033K24+ CTTCTTAAGACAACTTGGCAGAATGTCAGAACAGTCCCTTTGCGTTGTATTACTACTTTT
____________________________________________________________
consensus CTTCTTAAGACAACTTGGCAGAATGTCAGAACAGTCCCTTTGCGTTGTATTACTACTTTT
. : . : . : . : . : . :
rJMSF033O01+ CCAGGCCTTCTGCTGCTGCTTCTGTTTCCTGCTGAGGTGGATTCTTACTGGTTGGTATAA
rJMSF033K24+ CCAGGCCTTCTGCTGCTGCTTCTGTTTCCTGCTGAGGTGGATTCTTACTGGTTGGTATAA
____________________________________________________________
consensus CCAGGCCTTCTGCTGCTGCTTCTGTTTCCTGCTGAGGTGGATTCTTACTGGTTGGTATAA
. : . : . : . : . : . :
rJMSF033O01+ ATGAAGTTGCAACAGTAAAGGATATTCTTCCTGATGAGCGCACAAATGAATGAAACCCCA
rJMSF033K24+ ATGAAGTTGCAACAGTAAAGGATATTCTTCCTGATGAGCGCACAAATGAATGAAACCCCA
____________________________________________________________
consensus ATGAAGTTGCAACAGTAAAGGATATTCTTCCTGATGAGCGCACAAATGAATGAAACCCCA
. : . : . : . : . : . :
rJMSF033O01+ TCTCGCTGAACTTGTATACTACGAATTAACCAACTCACCCTGGAAATGCAGAGTTCTTTT
rJMSF035O01+ GCTGAACTTGTATACTACGAATTAACCAACTCANCCTGGAAATGCAGAGTTCTTTT
rJMSF033K24+ TCTCGCTGAACTTGTATACTACGAATTAACCAACTCACCCTGGAAATGCAGAGTTCTTTT
____________________________________________________________
consensus TCTCGCTGAACTTGTATACTACGAATTAACCAACTCACCCTGGAAATGCAGAGTTCTTTT
. : . : . : . : . : . :
rJMSF033O01+ GTCGTCGTGCGGAGAACAGTTGCTTTTAAATTAGTTGAAAGTTTTGACCTAACTTGTAAG
rJMSF035O01+ GTCGTCG
rJMSF033K24+ GTCGTCGTGCGGAGAACAGTTGCTTTTAAATTAGTTGAAAGTTTTGACCTAACTTGTAAG
____________________________________________________________
consensus GTCGTCGTGCGGAGAACAGTTGCTTTTAAATTAGTTGAAAGTTTTGACCTAACTTGTAAG
. : . : . : . : . : . :
rJMSF033O01+ AGTTCCAAGAGAGTCATTGTTTTATTAACTGGAGTGCCCGTCAACTTTACATAGACTCAG
rJMSF033K24+ AGTTCCAAGAGAGTCATTGTTTTATTAACTGGAGTGCCCGTCAACTTTACATAGACTCAG
____________________________________________________________
consensus AGTTCCAAGAGAGTCATTGTTTTATTAACTGGAGTGCCCGTCAACTTTACATAGACTCAG
. : . : . : . : . : . :
rJMSF033O01+ TTTTCTTATAGAGAAGCTTGACTATGTTTGTATCCCAGATAGATTTTTACAACATTATCT
rJMSF033K24+ TTTTCTTATAGAGAAGCTTGACTATGTTTGTATCCCAGATAGATTTTTACAACATTATCT
____________________________________________________________
consensus TTTTCTTATAGAGAAGCTTGACTATGTTTGTATCCCAGATAGATTTTTACAACATTATCT
. : . : . : . : . : . :
rJMSF033O01+ GTTGTTATTTAGGCCTCTG-TTTGGATCCGGTTGTTAGTTAGGCCTCTGATTG
rJMSF033K24+ GTTGTTATTTAGGCCTCTGTTTTGGATCCGGTTGTTAGTTAGGCCTCTGATTGGATCCAA
____________________________________________________________
consensus GTTGTTATTTAGGCCTCTGTTTTGGATCCGGTTGTTAGTTAGGCCTCTGATTGGATCCAA