Contig 001420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020A14Sequence716005202 (3)ref|XP_009604417.1|2e-64PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]434001420 (3)ref|XP_011101591.1|1e-23PREDICTED: probable receptor protein kinase TMK1 [Sesamum indicum]
JMSF033C16Sequence675005202 (3)ref|XP_009604417.1|1e-66PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]614001420 (3)ref|XP_011101591.1|6e-62PREDICTED: probable receptor protein kinase TMK1 [Sesamum indicum]
JMSF035O04Sequence668005202 (3)ref|XP_009604417.1|7e-59PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]596001420 (3)ref|XP_011101591.1|1e-58PREDICTED: probable receptor protein kinase TMK1 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF035O04+                                                                  CCGA
rJMSF033C16+                                                        TGACATGGTTCCGA
                      ____________________________________________________________
consensus                                                           TGACATGGTTCCGA
 
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rJMSF035O04+          AGGGTCCTCATCAACCGAGACAACCTCCGAAAGGCTATTGACCCTACTCTCGACCCCGAT
rJMSF033C16+          AGGGTCCTCATCAACCGAGACAACCTCCGAAAGGCTATTGACCCTACTNTCGACCCCGAT
                      ____________________________________________________________
consensus             AGGGTCCTCATCAACCGAGACAACCTCCGAAAGGCTATTGACCCTACTCTCGACCCCGAT
 
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rJMSF035O04+          GAGGAAACCTATCAGAGCATTGCCAAGGTAGCTGAGCTGGCTGGCCACTGCNCCGCTCGG
rJMSF033C16+          GNGGAAACCTATCAGAGCNTTGCCAAGGTAGCTGAGCTGGCTGGCCNCTGCNCCGCTNGG
                      ____________________________________________________________
consensus             GAGGAAACCTATCAGAGCATTGCCAAGGTAGCTGAGCTGGCTGGCCACTGCNCCGCTCGG
 
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rJMSF020A14+                                       CGCTGTGAATGTCCTGAGCCCNCTNGNGGNG
rJMSF035O04+          GAGCCATTCCAGAGACCCGACATGGGCCNCGCTGNGAANGTCCTGAGCCCNCTNGNGGAG
rJMSF033C16+          GAGCCNTTCCAGAGACCCGACATGGGCCNCGCTGTGAANGTCCTGAGCCCNCTNGNGGAG
                      ____________________________________________________________
consensus             GAGCCATTCCAGAGACCCGACATGGGCCNCGCTGTGAATGTCCTGAGCCCNCTNGNGGAG
 
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rJMSF020A14+          CAGTGGCGGCCTTNGAGNCCTGAAGAAGGCGAAAGNTANGGCATCGNCCTNCATATGAGC
rJMSF035O04+          CAGNGGCGGCCTTCGAGACCTGAAGAAGNCGAAAGCTATGGCATCGACCTCCATATGAGC
rJMSF033C16+          CNGTGGNGGCTTTCGAGACCTGAAGAAGACGAAAGCTATGGCATCGACCTCCATATGAGC
                      ____________________________________________________________
consensus             CAGTGGCGGCCTTCGAGACCTGAAGAAGGCGAAAGCTATGGCATCGACCTCCATATGAGC
 
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rJMSF020A14+          CTCCCGCNANCCCTTCAAAGATGGCAAGCCGACGAAGGGANTTCCNGGAAGTTTGNCGAT
rJMSF035O04+          CTCCCGCAAGCCCTTCAAAGATGGCAAGCCGACGAAGGGACTTCCNGGATGTTTGACGAT
rJMSF033C16+          CTCCCGCAAGCCCTTCAAAGATGGCAAGCCGACGAAGGGACTTCCNGGATGTTTGACGAT
                      ____________________________________________________________
consensus             CTCCCGCAAGCCCTTCAAAGATGGCAAGCCGACGAAGGGACTTCCNGGATGTTTGACGAT
 
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rJMSF020A14+          NTTTCCTACAGCCNAACGCNGTNGAGTATTCCCCCGAAACCTTCGGGATTCNNTGATACC
rJMSF035O04+          NTTTCCTACAGCCAAACGCAGTNGAGTATTCCCNCGAAACCTTCGGGATTCGNTGATACC
rJMSF033C16+          NTTTCCTACAGCCAAACGCAGTNGNGTATTCCCNCGAAACCTTCGGGATTCGNTGATACC
                      ____________________________________________________________
consensus             NTTTCCTACAGCCAAACGCAGTNGAGTATTCCCCCGAAACCTTCGGGATTCGNTGATACC
 
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rJMSF020A14+          TTCAGTTCAACNGNNTGCAGATGACCTTAAAGTANGCAAGNTCATTTCNTTCNTTTTTTT
rJMSF035O04+          TTCAGTTCAACAGATTGCAGATGACCTTAAAGTATGCAAGTTCATTTCATTCATTTTTTT
rJMSF033C16+          TTCAGTTCAACAGATTGCAGATGACCTTAAAGTATGCAAGTTCATTTCNTTCATTTTTTT
                      ____________________________________________________________
consensus             TTCAGTTCAACAGATTGCAGATGACCTTAAAGTATGCAAGTTCATTTCATTCATTTTTTT
 
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rJMSF020A14+          TTTTTCCTGACAAATTTGTGGTTTTCATATCATATTCTTAGCCTCTTAGGATTGCCCTGG
rJMSF035O04+          TTTTTCCTGACAAATTTGTGGTTTTCATATCATATTCTTAGCCTCTTAGGATTGCCCTGG
rJMSF033C16+          TTTTTCCTGACAAATTTGTGGTTTTCATATCATATTCTTAGCCTCTTAGGATTGCCCTGG
                      ____________________________________________________________
consensus             TTTTTCCTGACAAATTTGTGGTTTTCATATCATATTCTTAGCCTCTTAGGATTGCCCTGG
 
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rJMSF020A14+          TTTGATTGGATTGTTTATTTGACAGCTTGGTGTGAGCAAAGGCTTTATGACAGATATAAT
rJMSF035O04+          TTTGATTGGATTGTTTATTTGACAGCTTGGTGTGAGCAAAGGCTTTATGACAGATATAAT
rJMSF033C16+          TTTGATTGGATTGTTTATTTGACAGCTTGGTGTGAGCAAAGGCTTTATGACAGATATAAT
                      ____________________________________________________________
consensus             TTTGATTGGATTGTTTATTTGACAGCTTGGTGTGAGCAAAGGCTTTATGACAGATATAAT
 
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rJMSF020A14+          TTTGTTTNNGTCATTTTTGGGAATNGAAGAATCATGTAC                     
rJMSF035O04+          TTTGTTTTTGTCATTTTTGGGAATAGAAGAATCATGTACTAAATTGTTGACC        
rJMSF033C16+          TTTGTTTTTGTCATTTTTGGGAATAGAAGAATCATGTACTAAATTGTTGACCTCTCAAAT
                      ____________________________________________________________
consensus             TTTGTTTTTGTCATTTTTGGGAATAGAAGAATCATGTACTAAATTGTTGACCTCTCAAAT