| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF038P09 | Sequence | 505 | 013512 (3) | ref|XP_006439204.1| | 9e-13 | hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth | 715 | 001419 (4) | ref|XP_002272303.2| | 4e-103 | PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X1 [Vit |
| JMFN039A14 | Sequence | 515 | 001419 (4) | ref|XP_006439204.1| | 1e-52 | hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth | |||||
| JMSF033C06 | Sequence | 692 | 001419 (4) | ref|XP_002272303.2| | 3e-102 | PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X1 [Vit | |||||
| JMSF042I11 | Sequence | 724 | 013512 (3) | ref|XP_006439204.1| | 2e-29 | hypothetical protein CICLE_v10023768mg [Citrus clementina] gb|ESR52444.1| hypoth | 569 | 001419 (4) | ref|XP_010660225.1| | 5e-79 | PREDICTED: polyadenylate-binding protein-interacting protein 11 isoform X2 [Vit |
This contig is upended
. : . : . : . : . : . :
rJMFF038P09+ CCAGGTTGTGGACTGCCGCATATGTGGAGACCCC
rJMSF033C06+ AGGTTGTGGACTGCCGCATATGTGGAGACCCC
____________________________________________________________
consensus CCAGGTTGTGGACTGCCGCATATGTGGAGACCCC
. : . : . : . : . : . :
rJMFF038P09+ AAGTCCATCCTTCACTTTGCTTTTATAGAGTTTACTGACGAGGAAGGTGCACATGCTGCT
rJMSF033C06+ AAGTCCATCCTTCACTTTGCTTTTATAGAGTTTACTGACGAGGAAGGTGCACATGCTGCT
____________________________________________________________
consensus AAGTCCATCCTTCACTTTGCTTTTATAGAGTTTACTGACGAGGAAGGTGCACATGCTGCT
. : . : . : . : . : . :
rJMFF038P09+ CTCAGTCTTTCGGGGACCATGCTGGGATATTATCCCGTGAAGGTGTTGCCTTCTAAAACT
rJMSF042I11+ GGTGTTGCCTTCTAAAACT
rJMSF033C06+ CTCAGTCTTTCGGGGACCATGCTGGGATATTATCCCGTGAAGGTGTTGCCTTCTAAAACT
____________________________________________________________
consensus CTCAGTCTTTCGGGGACCATGCTGGGATATTATCCCGTGAAGGTGTTGCCTTCTAAAACT
. : . : . : . : . : . :
rJMFF038P09+ GCAATTGCTCCCGTGAACCCCACTTTTTTGCCCAGGAATGAGGATGAAAGGGAAATGTGT
rJMSF042I11+ GCAATTGCTCCCGTGAACCCCACTTTTNTGCCCAGGAATGAGGATGAAAGGGAAATGTGT
JMFN039A14- AATGTGT
rJMSF033C06+ GCAATTGCTCCCGTGAACCCCACTTTTTTGCCCAGGAATGAGGATGAAAGGGAAATGTGT
____________________________________________________________
consensus GCAATTGCTCCCGTGAACCCCACTTTTTTGCCCAGGAATGAGGATGAAAGGGAAATGTGT
. : . : . : . : . : . :
rJMFF038P09+ GCAAGAACAGTTTACTGTACAAATATTGACAAGAAGGTTTCTCAAGCAGATGTTAAGCTT
rJMSF042I11+ GCAAGAACAGTTTACTGTACAAATATNGACAAGAAGGTCTCTCAAGCAGATGTTAAGCTT
JMFN039A14- GCAAGAACAGTTTACTGTACAAATATTGACAAGAAGGTTTCTCAAGCAGATGTTAAGCTT
rJMSF033C06+ GCAAGAACAGTTTACTGTACAAATATTGACAAGAAGGTTTCTCAAGCAGATGTTAAGCTT
____________________________________________________________
consensus GCAAGAACAGTTTACTGTACAAATATTGACAAGAAGGTTTCTCAAGCAGATGTTAAGCTT
. : . : . : . : . : . :
rJMFF038P09+ TTCTTTGAATCCATTTGTGGGGAGGTTTATCGTTTGAGGCTGCTTGGAGACTATCACCAT
rJMSF042I11+ TTCTTTGAATCCATTTGTGGGGAGGTTTATCGTTTGAGGCTGCTTGGAGACTATCACCAT
JMFN039A14- TTCTTTGAATCCATTTGTGGGGAGGTTTATCGTTTGAGGCTGCTTGGAGACTATCACCAT
rJMSF033C06+ TTCTTTGAATCCATTTGTGGGGAGGTTTATCGTTTGAGGCTGCTTGGAGACTATCACCAT
____________________________________________________________
consensus TTCTTTGAATCCATTTGTGGGGAGGTTTATCGTTTGAGGCTGCTTGGAGACTATCACCAT
. : . : . : . : . : . :
rJMFF038P09+ TCCACCCGTATTGCCTTTGTTGAATTTACAATGGCTGAAAGTGCGATCGCTGCTCTCAAC
rJMSF042I11+ TCCACCCGTATTGCCTTTGTNGAATTTACAATGGCNGAAAGTGCGATCGCTGCTCTCAAC
JMFN039A14- TCCACCCGTATTGCCTTTGTTGAATTTACAATGGCTGAAAGTGCGATCGCTGCTCTCAAC
rJMSF033C06+ TCCACCCGTATTGCCTTTGTTGAATTTACAATGGCTGAAAGTGCGATCGCTGCTCTCAAC
____________________________________________________________
consensus TCCACCCGTATTGCCTTTGTTGAATTTACAATGGCTGAAAGTGCGATCGCTGCTCTCAAC
. : . : . : . : . : . :
rJMFF038P09+ TGCAGCGGGGTCATTCTGGGCTCACTGCCTATCAGGGTAAGCCCATCAAAGACGCCTGTG
rJMSF042I11+ TGCAGCGGGGTCATTCTGGGCTCACTGCCTATCAGGGTAAGCCCATCAAAGACGCCTGTG
JMFN039A14- TGCAGCGGGGTCATTCTGGGCTCACTGCCTATCAGGGTAAGCCCATTAAAGACGCCTGTG
rJMSF033C06+ TGCAGCGGGGTCATTCTGGGCTCACTGCCTATCAGGGTAAGCCCATCAAAGACGCCTGTG
____________________________________________________________
consensus TGCAGCGGGGTCATTCTGGGCTCACTGCCTATCAGGGTAAGCCCATCAAAGACGCCTGTG
. : . : . : . : . : . :
rJMFF038P09+ CGCCCACGAGCTCCTCGCCTTCAAATG
rJMSF042I11+ CGCCCACGAGCTCCTCGCCTTCAAATGACTTGATCGAATCTGCATTTCTNCCGTCACAAC
JMFN039A14- CGCCCACGAGCTCCTCGCCTTCAAATG
rJMSF033C06+ CGCCCACGAGCTCCTCGCCTTCAAATGACTTGATCGAATCTGCATTTCTACCGTCACAAC
____________________________________________________________
consensus CGCCCACGAGCTCCTCGCCTTCAAATGACTTGATCGAATCTGCATTTCTACCGTCACAAC
. : . : . : . : . : . :
rJMSF042I11+ TGCATCTATNTGAAATACCATCTTTCTGGAATGTGTAAAGAAATTGTCTTTTATTTCATA
rJMSF033C06+ TGCATCTATTTGAAATACCATCTTTCTGGAATGTGTAAAGAAATTGTCTTTTATTTCATA
____________________________________________________________
consensus TGCATCTATTTGAAATACCATCTTTCTGGAATGTGTAAAGAAATTGTCTTTTATTTCATA
. : . : . : . : . : . :
rJMSF042I11+ TACATATGCNTCCTTCTGTCTTTGGGTTAATTATGGTGTAAGGATAAAACTTTATCCTTA
rJMSF033C06+ TACATATGCTTCCTTCTGTCTTTGGGTTAATTATGGTGTAAGGATAAAACTTTATCCTTA
____________________________________________________________
consensus TACATATGCTTCCTTCTGTCTTTGGGTTAATTATGGTGTAAGGATAAAACTTTATCCTTA
. : . : . : . : . : . :
rJMSF042I11+ ATNAGTAGTAGTTGCGTTGCATCG
rJMSF033C06+ ATTAGTAGTAGTTGCGTTGCATCGCATGTTTTGCTTATTGTAACACGCTGTAGAGCTGGT
____________________________________________________________
consensus ATTAGTAGTAGTTGCGTTGCATCGCATGTTTTGCTTATTGTAACACGCTGTAGAGCTGGT