Contig 001418:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033A08Sequence636008030 (2)ref|XP_009592155.1|2e-66PREDICTED: probable inactive patatin-like protein 9 [Nicotiana tomentosiformis]699001418 (2)ref|XP_009592155.1|4e-79PREDICTED: probable inactive patatin-like protein 9 [Nicotiana tomentosiformis]
JMSF042N03Sequence776008030 (2)ref|XP_009592155.1|9e-66PREDICTED: probable inactive patatin-like protein 9 [Nicotiana tomentosiformis]734001418 (2)ref|XP_009592155.1|8e-98PREDICTED: probable inactive patatin-like protein 9 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF042N03+                                                       GCCGACGCCTCGGAG
                      ____________________________________________________________
consensus                                                          GCCGACGCCTCGGAG
 
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rJMSF042N03+          TCCGCGAGCTTTGACTTCGAGCTCTGGAAAGTGTGCCGCGCCACGTCAGCTAATCCGTCC
rJMSF033A08+                              GCTCTGGAAAGTGTGCCGCGCCACGTCAGNTAATCCGTCC
                      ____________________________________________________________
consensus             TCCGCGAGCTTTGACTTCGAGCTCTGGAAAGTGTGCCGCGCCACGTCAGCTAATCCGTCC
 
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rJMSF042N03+          A-TTTCAAACCGTTTCCACTCAAGTCCGTCGACGGAAAAACCTTTTGCCTGGCCGTAGAC
rJMSF033A08+          ATTTTCAAACCGTTTCCANTCAAGTCCGTCGACGGAAAAACCTTTTGCCTGGCCGTAGAC
                      ____________________________________________________________
consensus             ATTTTCAAACCGTTTCCACTCAAGTCCGTCGACGGAAAAACCTTTTGCCTGGCCGTAGAC
 
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rJMSF042N03+          GGCGGACTCGTCATGAACAACCCAACCGCCGCCGCCGTTACTCACGTTTTGCACAACAAG
rJMSF033A08+          GGCGGACTCGTCATGAACAACCCAACCGCCGCCGCCGTTACTCACGTTTTGCACAACAAG
                      ____________________________________________________________
consensus             GGCGGACTCGTCATGAACAACCCAACCGCCGCCGCCGTTACTCACGTTTTGCACAACAAG
 
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rJMSF042N03+          CGAGATTTTCCGTCCGTAACAGGCGTGGATGACCTTTTGGTTCTCTCTCTAGGTAACGGT
rJMSF033A08+          CGAGATTTTCCGTCCGTAACAGGCGTGGATGACCTTTTGGTTCTCTCTCTAGGTAACGGT
                      ____________________________________________________________
consensus             CGAGATTTTCCGTCCGTAACAGGCGTGGATGACCTTTTGGTTCTCTCTCTAGGTAACGGT
 
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rJMSF042N03+          TCATTTTCCGCTTCGCCAAACTCTAAACTCCGTGACAACGACTATTGCTCTACGGCGTCC
rJMSF033A08+          TCATTTTCCGCTTCGCCAAACTCTAAACTCCGTGACAACGACTATTGCTNTACGGCGTCC
                      ____________________________________________________________
consensus             TCATTTTCCGCTTCGCCAAACTCTAAACTCCGTGACAACGACTATTGCTCTACGGCGTCC
 
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rJMSF042N03+          GTTGTAGGCATTGTCCTTGACGGCGTTTCCGAAACCGTCGATCAAATGCTTGGCAACGCC
rJMSF033A08+          GTTGTAGGCATTGTCCTTGAC-GCGTTTCCGAAACCGTCGATCAAATGCTTGGCAACGCC
                      ____________________________________________________________
consensus             GTTGTAGGCATTGTCCTTGACGGCGTTTCCGAAACCGTCGATCAAATGCTTGGCAACGCC
 
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rJMSF042N03+          TTCACTTGGAACCCGAACGGTTACGTGAGAATCCAGGCAAATGGCCTTGCGAGTGGACTG
rJMSF033A08+          TTCACTTGGAACCCGAACGGTTACGTGAGAATCCAGGCAAATGGCCTTGCGAGTGGACTG
                      ____________________________________________________________
consensus             TTCACTTGGAACCCGAACGGTTACGTGAGAATCCAGGCAAATGGCCTTGCGAGTGGACTG
 
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rJMSF042N03+          GGAGAGAAAGTGGAGGACGTGTTGGGAGAGAGAGGAGTGGAATCGTTGCCGTTTGGCGGC
rJMSF033A08+          GGAGAGAAAGTGGAGGACGTGTTGGGAGAGAGAGGAGTGGAATCGTTGCCGTTTGGCGGC
                      ____________________________________________________________
consensus             GGAGAGAAAGTGGAGGACGTGTTGGGAGAGAGAGGAGTGGAATCGTTGCCGTTTGGCGGC
 
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rJMSF042N03+          AAGCGGTTATTGACGGAAACAAACGGACAGCGAATCGGAGGCTTCGTGCAACGGCTTGTT
rJMSF033A08+          AAGCGGTTATTGACGGAAACAAACGGACAGCGAATCGGAGGCTTCGTGCAACGGCTTGTT
                      ____________________________________________________________
consensus             AAGCGGTTATTGACGGAAACAAACGGACAGCGAATCGGAGGCTTCGTGCAACGGCTTGTT
 
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rJMSF042N03+          GCTTCCGGGAGGAGCAGCCTACCACCGAGTCCGTGCAAGGAAAATGCCGTTAGTCCTCTT
rJMSF033A08+          GCTTCCGGGAGGAGCAGCCTACCACCGAGTCCGTGCAAGGAAAATGCCGTTAGTCCTCTT
                      ____________________________________________________________
consensus             GCTTCCGGGAGGAGCAGCCTACCACCGAGTCCGTGCAAGGAAAATGCCGTTAGTCCTCTT
 
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rJMSF042N03+          ACTAACGGCCGTTAATATCATCATCCTATTCCTCTTTTTGTAATGCTTTTTTTTGTCCAG
rJMSF033A08+          ACTAACGGCCGTTAATATCATCATCCTATTCCTCTTTTTGTAATGCTTTTTTTTGTCCAG
                      ____________________________________________________________
consensus             ACTAACGGCCGTTAATATCATCATCCTATTCCTCTTTTTGTAATGCTTTTTTTTGTCCAG
 
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rJMSF042N03+          ACTCTATTTAGTCTATGCCCAACTAATAAATGTAGC                        
rJMSF033A08+          ACTCTATTTAGTCTATGCCCAACTAATAAATGTAGCCAGTGATCCTGTAACAACTAGCAT
                      ____________________________________________________________
consensus             ACTCTATTTAGTCTATGCCCAACTAATAAATGTAGCCAGTGATCCTGTAACAACTAGCAT