Contig 001417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012D08Sequence471001417 (7)ref|XP_009772271.1|3e-36PREDICTED: WAS/WASL-interacting protein family member 1 isoform X1 [Nicotiana s639001417 (7)ref|XP_006338202.1|8e-38PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF032L03Sequence690001417 (7)ref|XP_009772271.1|2e-67PREDICTED: WAS/WASL-interacting protein family member 1 isoform X1 [Nicotiana s647001417 (7)ref|XP_006338202.1|2e-35PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF033N22Sequence687001417 (7)ref|XP_006338202.1|1e-58PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]564001417 (7)ref|XP_006338202.1|6e-16PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF051E07Sequence691019042ref|XP_006338202.1|6e-11PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]755001417 (7)ref|XP_006338202.1|6e-56PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF012D08- GCTGATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
JMSF032L03- GATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
                      ____________________________________________________________
consensus GCTGATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
 
. : . : . : . : . : . :
JMSF012D08- CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
JMSF032L03- CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
                      ____________________________________________________________
consensus CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
 
. : . : . : . : . : . :
JMSF012D08- AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
JMSF032L03- AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
                      ____________________________________________________________
consensus AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
 
. : . : . : . : . : . :
JMSF012D08- GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
JMSF032L03- GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
                      ____________________________________________________________
consensus GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
 
. : . : . : . : . : . :
JMSF012D08- CGATTGCCGGACGGCCATG
JMSF032L03- CGATTGCCGGACGGCCATGGATATAGAATGCGTGCAGGTTCTGTTTCTCCTGTGCGCCAT
                      ____________________________________________________________
consensus CGATTGCCGGACGGCCATGGATATAGAATGCGTGCAGGTTCTGTTTCTCCTGTGCGCCAT
 
. : . : . : . : . : . :
JMSF032L03- AGAAATACAGATCGTCAATTCAGTCCAGATTTTGTTCACCCTGGTGGTCCACCACGTGGT
                      ____________________________________________________________
consensus AGAAATACAGATCGTCAATTCAGTCCAGATTTTGTTCACCCTGGTGGTCCACCACGTGGT
 
. : . : . : . : . : . :
JMSF032L03- CATGGATTTGGCAATGGGAGAGATCCTGGTAGATATCGAGACTACTCACCCCCTTATGGA
                      ____________________________________________________________
consensus CATGGATTTGGCAATGGGAGAGATCCTGGTAGATATCGAGACTACTCACCCCCTTATGGA
 
. : . : . : . : . : . :
JMSF032L03- CGAGGGAGGGAGAGCAACAGGTTTGTTGGTAGGAGCTATGATCGCCCTGGTAATGCTCCT
                      ____________________________________________________________
consensus CGAGGGAGGGAGAGCAACAGGTTTGTTGGTAGGAGCTATGATCGCCCTGGTAATGCTCCT
 
. : . : . : . : . : . :
JMSF032L03- GGTTCATTCAAAGGGGAAAATGTGCCTAGAAGTAATCCAAATGTACGGCCAAGAGAAGGT
JMSF033N22- AGGT
                      ____________________________________________________________
consensus GGTTCATTCAAAGGGGAAAATGTGCCTAGAAGTAATCCAAATGTACGGCCAAGAGAAGGT
 
. : . : . : . : . : . :
JMSF032L03- GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
JMSF033N22- GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
rJMSF051E07+ TTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
                      ____________________________________________________________
consensus GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
 
. : . : . : . : . : . :
JMSF032L03- TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
JMSF033N22- TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
rJMSF051E07+ TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
                      ____________________________________________________________
consensus TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
 
. : . : . : . : . : . :
JMSF032L03- CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAA
JMSF033N22- CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
rJMSF051E07+ CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
rJMSF012D08+ TGGGCCCCCAATGGACCGTTNTCCCGGAAGGTTTATTAATGGC
rJMSF032L03+ TGGGCCCCCAATGGACCGTTTTCCCGGAAGGTTTATTAATGGC
                      ____________________________________________________________
consensus CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
 
. : . : . : . : . : . :
JMSF033N22- CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF051E07+ CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF033N22+ AGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF012D08+ CNCAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF032L03+ CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
                      ____________________________________________________________
consensus CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
 
. : . : . : . : . : . :
JMSF033N22- CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF051E07+ CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF033N22+ CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGNGCANAGATATGGCAGAT
rJMSF012D08+ CCNCATCCNAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF032L03+ CCACATCCNAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
                      ____________________________________________________________
consensus CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
 
. : . : . : . : . : . :
JMSF033N22- TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF051E07+ TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF033N22+ TTTGTGGATGAAGATTTTAGGGGCNGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF012D08+ TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF032L03+ TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
                      ____________________________________________________________
consensus TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
 
. : . : . : . : . : . :
JMSF033N22- CACAGAGATCGTGGAAGGGAGACCTTCTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
rJMSF051E07+ CACAGAGATCGTGGAAGGGAGACCTTCTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
rJMSF033N22+ CNCAGAGATNGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTNTGAAAGGCGATTG
rJMSF012D08+ CNCAGAGATCGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGNGATTG
rJMSF032L03+ CNCAGAGATNGNGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGNGATTG
                      ____________________________________________________________
consensus CACAGAGATCGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
 
. : . : . : . : . : . :
JMSF033N22- CCATCTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF051E07+ CCATCTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF033N22+ CCATTTCCTCCTCCACCCCCAGTNCCAGCCATGCCAAGTNGTGACCAANGGGCTNGTGAT
rJMSF012D08+ CCATTTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF032L03+ CCATTTCCTCCTCCNCCCCCAGTACCAGCCANGCCAAGTCGTGACCAATGGGCTNGTGAT
                      ____________________________________________________________
consensus CCATTTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
 
. : . : . : . : . : . :
JMSF033N22- ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF051E07+ ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF033N22+ ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGNGAGGCAACGGCAAAGGACTACCGTNGC
rJMSF012D08+ ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGNGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF032L03+ ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCNC
                      ____________________________________________________________
consensus ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
 
. : . : . : . : . : . :
JMSF033N22- AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
rJMSF051E07+ AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
rJMSF033N22+ AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGATGCCTTAGTTATTATTTGTGT
rJMSF012D08+ AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGATGCCTTAGTTATTATTTGTGT
rJMSF032L03+ AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGANGCCTTAGTTATTATTTGTGT
                      ____________________________________________________________
consensus AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
 
. : . : . : . : . : . :
JMSF033N22- GATATTTAGGCTGTTGTTTGGTTCCNAGTGGACGCACACCTTATAGTTTGCGGAAGGGGA
rJMSF051E07+ GATATTTAGACTGTTGTTTGGTTCCAAGTGGACGCACNCCTTATAGTTTGCGGAAGGGGA
rJMSF033N22+ GATATTTAGGCTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
rJMSF012D08+ GATATTTAGACTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
rJMSF032L03+ GATATTTAGACTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
                      ____________________________________________________________
consensus GATATTTAGGCTGTTGTTTGGTTCCAAGTGGACGCACACCTTATAGTTTGCGGAAGGGGA
 
. : . : . : . : . : . :
JMSF033N22- ACCTCTCATGATTTTGTTTGCTG
rJMSF051E07+ ACCTCTCATGATTTTGTTTGCTGGCTGTAATTCTGGGATTCTTTGCTGCACTTTCGTCCG
rJMSF033N22+ ACCTCTCNTGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCNCTTTCGTCCG
rJMSF012D08+ ACCTCTCATGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCACTTTCGTCCG
rJMSF032L03+ ACCTCTCATGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCNCTTTCGTCCN
                      ____________________________________________________________
consensus ACCTCTCATGATTTTGTTTGCTGGCTGTAATTCTGGGATTCTTTGCTGCACTTTCGTCCG
 
. : . : . : . : . : . :
rJMSF051E07+ C-TTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTT
rJMSF033N22+ CTTTGTGCCAAACCTACCTTNTAAAANTGTTGCTTTTTGCTGCCCCTTTT
rJMSF012D08+ CTTTGTGCCAAACCTACCTTNTAAAATTGTTGCTTTTTGCTGCCCCTTTT
rJMSF032L03+ CTTTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTTATTGATTTTT
                      ____________________________________________________________
consensus CTTTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTTATTGATTTTT