Contig 001417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012D08Sequence471001417 (7)ref|XP_009772271.1|3e-36PREDICTED: WAS/WASL-interacting protein family member 1 isoform X1 [Nicotiana s639001417 (7)ref|XP_006338202.1|8e-38PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF032L03Sequence690001417 (7)ref|XP_009772271.1|2e-67PREDICTED: WAS/WASL-interacting protein family member 1 isoform X1 [Nicotiana s647001417 (7)ref|XP_006338202.1|2e-35PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF033N22Sequence687001417 (7)ref|XP_006338202.1|1e-58PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]564001417 (7)ref|XP_006338202.1|6e-16PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]
JMSF051E07Sequence691019042ref|XP_006338202.1|6e-11PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]755001417 (7)ref|XP_006338202.1|6e-56PREDICTED: RNA-binding protein EWS-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF012D08-                         GCTGATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
JMSF032L03-                            GATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
                      ____________________________________________________________
consensus                           GCTGATTTTTATTTTTCAGTACGCAGCGGGCATCATCGGTACGACC
 
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JMSF012D08-           CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
JMSF032L03-           CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
                      ____________________________________________________________
consensus             CACACTACGCGATACGAGAGTAAGATGTCGCGAGAGAAGGACCAGGCGACGCCGCACCTC
 
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JMSF012D08-           AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
JMSF032L03-           AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
                      ____________________________________________________________
consensus             AGCAGCCTTGTTGTACGGCCCACTGATAGCGGCGGCGGAGCGGCCGCCGGCGCAGGCGGT
 
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JMSF012D08-           GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
JMSF032L03-           GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
                      ____________________________________________________________
consensus             GGAACCGACTACGAGACTGGCGAGGTCCATCGGAATCTACCTCCGTATTCTCGCTCCAAT
 
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JMSF012D08-           CGATTGCCGGACGGCCATG                                         
JMSF032L03-           CGATTGCCGGACGGCCATGGATATAGAATGCGTGCAGGTTCTGTTTCTCCTGTGCGCCAT
                      ____________________________________________________________
consensus             CGATTGCCGGACGGCCATGGATATAGAATGCGTGCAGGTTCTGTTTCTCCTGTGCGCCAT
 
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JMSF032L03-           AGAAATACAGATCGTCAATTCAGTCCAGATTTTGTTCACCCTGGTGGTCCACCACGTGGT
                      ____________________________________________________________
consensus             AGAAATACAGATCGTCAATTCAGTCCAGATTTTGTTCACCCTGGTGGTCCACCACGTGGT
 
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JMSF032L03-           CATGGATTTGGCAATGGGAGAGATCCTGGTAGATATCGAGACTACTCACCCCCTTATGGA
                      ____________________________________________________________
consensus             CATGGATTTGGCAATGGGAGAGATCCTGGTAGATATCGAGACTACTCACCCCCTTATGGA
 
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JMSF032L03-           CGAGGGAGGGAGAGCAACAGGTTTGTTGGTAGGAGCTATGATCGCCCTGGTAATGCTCCT
                      ____________________________________________________________
consensus             CGAGGGAGGGAGAGCAACAGGTTTGTTGGTAGGAGCTATGATCGCCCTGGTAATGCTCCT
 
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JMSF032L03-           GGTTCATTCAAAGGGGAAAATGTGCCTAGAAGTAATCCAAATGTACGGCCAAGAGAAGGT
JMSF033N22-                                                                   AGGT
                      ____________________________________________________________
consensus             GGTTCATTCAAAGGGGAAAATGTGCCTAGAAGTAATCCAAATGTACGGCCAAGAGAAGGT
 
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JMSF032L03-           GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
JMSF033N22-           GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
rJMSF051E07+                        TTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
                      ____________________________________________________________
consensus             GACTGGATATGCCATTTGTGCAACAACTTGAACTTTGCAAGACGCGAGTACTGTAACAAC
 
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JMSF032L03-           TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
JMSF033N22-           TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
rJMSF051E07+          TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
                      ____________________________________________________________
consensus             TGCAAGAGTTTGCGTTATGCATCTTCTGGGAGTCCTAGGAGAGGCTATGCCCCTCCTCCT
 
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JMSF032L03-           CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAA              
JMSF033N22-           CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
rJMSF051E07+          CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
rJMSF012D08+                           TGGGCCCCCAATGGACCGTTNTCCCGGAAGGTTTATTAATGGC
rJMSF032L03+                           TGGGCCCCCAATGGACCGTTTTCCCGGAAGGTTTATTAATGGC
                      ____________________________________________________________
consensus             CCTCTTCGAAGAGTTCCTGGGCCCCCAATGGACCGTTCTCCCGGAAGGTTTATTAATGGC
 
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JMSF033N22-           CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF051E07+          CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF033N22+                                     AGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF012D08+          CNCAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
rJMSF032L03+          CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
                      ____________________________________________________________
consensus             CACAGGTCCCCTCCTCGTGGGTGGGCTAGGGATGATCCTAGAGATTTTAGAGCTGGTTTT
 
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JMSF033N22-           CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF051E07+          CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF033N22+          CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGNGCANAGATATGGCAGAT
rJMSF012D08+          CCNCATCCNAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
rJMSF032L03+          CCACATCCNAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
                      ____________________________________________________________
consensus             CCACATCCAAGATATGAAGGAAGGTTCCCGGATCCCCCTTTGCGCAGAGATATGGCAGAT
 
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JMSF033N22-           TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF051E07+          TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF033N22+          TTTGTGGATGAAGATTTTAGGGGCNGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF012D08+          TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
rJMSF032L03+          TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
                      ____________________________________________________________
consensus             TTTGTGGATGAAGATTTTAGGGGCAGGGGTAGGTTTGATAGACCAGCGCTTGATTGGGGC
 
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JMSF033N22-           CACAGAGATCGTGGAAGGGAGACCTTCTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
rJMSF051E07+          CACAGAGATCGTGGAAGGGAGACCTTCTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
rJMSF033N22+          CNCAGAGATNGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTNTGAAAGGCGATTG
rJMSF012D08+          CNCAGAGATCGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGNGATTG
rJMSF032L03+          CNCAGAGATNGNGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGNGATTG
                      ____________________________________________________________
consensus             CACAGAGATCGTGGAAGGGAGACCTTTTTACCTGAAAGGAGAGGTTATGAAAGGCGATTG
 
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JMSF033N22-           CCATCTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF051E07+          CCATCTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF033N22+          CCATTTCCTCCTCCACCCCCAGTNCCAGCCATGCCAAGTNGTGACCAANGGGCTNGTGAT
rJMSF012D08+          CCATTTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
rJMSF032L03+          CCATTTCCTCCTCCNCCCCCAGTACCAGCCANGCCAAGTCGTGACCAATGGGCTNGTGAT
                      ____________________________________________________________
consensus             CCATTTCCTCCTCCACCCCCAGTACCAGCCATGCCAAGTCGTGACCAATGGGCTCGTGAT
 
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JMSF033N22-           ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF051E07+          ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF033N22+          ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGNGAGGCAACGGCAAAGGACTACCGTNGC
rJMSF012D08+          ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGNGAGGCAACGGCAAAGGACTACCGTCGC
rJMSF032L03+          ATCAGAAAGAGGAGCCGTTNTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCNC
                      ____________________________________________________________
consensus             ATCAGAAAGAGGAGCCGTTCTCCAATCAGAGGTGAGGCAACGGCAAAGGACTACCGTCGC
 
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JMSF033N22-           AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
rJMSF051E07+          AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
rJMSF033N22+          AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGATGCCTTAGTTATTATTTGTGT
rJMSF012D08+          AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGATGCCTTAGTTATTATTTGTGT
rJMSF032L03+          AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCNTGANGCCTTAGTTATTATTTGTGT
                      ____________________________________________________________
consensus             AATATGTTTGCAGGTAGGGGCCGGAGATGATTGCCATGATGCCTTAGTTATTATTTGTGT
 
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JMSF033N22-           GATATTTAGGCTGTTGTTTGGTTCCNAGTGGACGCACACCTTATAGTTTGCGGAAGGGGA
rJMSF051E07+          GATATTTAGACTGTTGTTTGGTTCCAAGTGGACGCACNCCTTATAGTTTGCGGAAGGGGA
rJMSF033N22+          GATATTTAGGCTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
rJMSF012D08+          GATATTTAGACTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
rJMSF032L03+          GATATTTAGACTGTTGTTTGGTTCCAAGNGGACGCNCNCCTTATAGTTTGCGGAAGGGGA
                      ____________________________________________________________
consensus             GATATTTAGGCTGTTGTTTGGTTCCAAGTGGACGCACACCTTATAGTTTGCGGAAGGGGA
 
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JMSF033N22-           ACCTCTCATGATTTTGTTTGCTG                                     
rJMSF051E07+          ACCTCTCATGATTTTGTTTGCTGGCTGTAATTCTGGGATTCTTTGCTGCACTTTCGTCCG
rJMSF033N22+          ACCTCTCNTGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCNCTTTCGTCCG
rJMSF012D08+          ACCTCTCATGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCACTTTCGTCCG
rJMSF032L03+          ACCTCTCATGATTTTGTTTGCTGGCTGTAATTNTGGGATTNTTTGCTGCNCTTTCGTCCN
                      ____________________________________________________________
consensus             ACCTCTCATGATTTTGTTTGCTGGCTGTAATTCTGGGATTCTTTGCTGCACTTTCGTCCG
 
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rJMSF051E07+          C-TTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTT          
rJMSF033N22+          CTTTGTGCCAAACCTACCTTNTAAAANTGTTGCTTTTTGCTGCCCCTTTT          
rJMSF012D08+          CTTTGTGCCAAACCTACCTTNTAAAATTGTTGCTTTTTGCTGCCCCTTTT          
rJMSF032L03+          CTTTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTTATTGATTTTT
                      ____________________________________________________________
consensus             CTTTGTGCCAAACCTACCTTCTAAAATTGTTGCTTTTTGCTGCCCCTTTTATTGATTTTT