Contig 001412:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019M14Sequence448005181 (5)gb|AGB85112.1|4e-67ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]728001412 (4)gb|AGB85112.1|3e-139ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]
JMSF031P07Sequence647005181 (5)gb|AFL55399.1|7e-131ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]729001412 (4)gb|AGB85112.1|3e-135ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]
JMSF032K01Sequence640005181 (5)gb|AFL55399.1|9e-91ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]710001412 (4)gb|AGB85112.1|3e-116ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]
JMSF050F03Sequence632005181 (5)gb|AFL55399.1|6e-122ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]751001412 (4)gb|AGB85112.1|3e-139ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas]

Alignment

This contig is upended


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rJMFF019M14+                                               TTTAAGATGGCGTTTTCCAACTG
rJMSF050F03+                            AAGGAGATACTTCTGAACNTTTAAGATGGCGTTTTCCAACTG
rJMSF031P07+                                                            TTTCCAACTG
                      ____________________________________________________________
consensus                               AAGGAGATACTTCTGAACNTTTAAGATGGCGTTTTCCAACTG
 
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rJMFF019M14+          CAAACGACTTCGGATCAGAGATCATCCCTGCCTCAGCCAGGGAGTTCTTTATACAGGCTT
rJMSF050F03+          CAAACGACTTCGGATCAGAGATCATCCCTGCCTCAGCCAGGGAGTTCTTTATACAGGCTT
rJMSF032K01+                   TCGGATCAGAGATCATCCCTGCCTCAGCCAGGGAGTTCTTTATACAGGCTT
rJMSF031P07+          CAAACGACTTCGGATCAGAGATCATCCCTGCCTCAGCCAGGGAGTTCTTTATACAGGCTT
                      ____________________________________________________________
consensus             CAAACGACTTCGGATCAGAGATCATCCCTGCCTCAGCCAGGGAGTTCTTTATACAGGCTT
 
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rJMFF019M14+          ATCTA-TTCAATGACTACTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAAC
rJMSF050F03+          ATCTA-TTCAATGACTACTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAAC
rJMSF032K01+          ATCTATTTCAATGACTACTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAAC
rJMSF031P07+          ATCTA-TTCAATGACTACTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAAC
                      ____________________________________________________________
consensus             ATCTA-TTCAATGACTACTGGGAAGACATTGGTACAATCAGATCATTCTTTGAAGCAAAC
 
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rJMFF019M14+          CTTGCCCTCACTGAACATCCACCAAGATTCAGCTTCTATGATGCCGCAAAGCCAATATAC
rJMSF050F03+          CTTGCCCTCACTGAACATCCACCAAGATTCAGCTTCTATGATGCCGCAAAGCCAATATAC
rJMSF032K01+          CTTGCCCTCACTGAACATCCACCAAGATTCAGCTTCTATGATGCCGCAAAGCCAATATAC
rJMSF031P07+          CTTGCCCTCACTGAACATCCACCAAGATTCAGCTTCTATGATGCCGCAAAGCCAATATAC
                      ____________________________________________________________
consensus             CTTGCCCTCACTGAACATCCACCAAGATTCAGCTTCTATGATGCCGCAAAGCCAATATAC
 
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rJMFF019M14+          ACATCGAGGAGGAACTTGCCACCATCAGCCATCACTAACAGCAAGATTGTTGACTCCATC
rJMSF050F03+          ACATCGAGGAGGAACTTGCCACCATCAGCCATCACTAACAGCAAGATTGTTGACTCCATC
rJMSF032K01+          ACATCGAGGAGGAACTTGCCACCATCAGCCATCACTAACAGCAAGATTGTTGACTCCATC
rJMSF031P07+          ACATCGAGGAGGAACTTGCCACCATCAGCCATCACTAACAGCAAGATTGTTGACTCCATC
                      ____________________________________________________________
consensus             ACATCGAGGAGGAACTTGCCACCATCAGCCATCACTAACAGCAAGATTGTTGACTCCATC
 
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rJMFF019M14+          ATATCTCATGGTAGTTTCTTGTCAGATTGCTTCGTCGAGCACAGTGTTGTTGGCATCCGG
rJMSF050F03+          ATATCTCATGGTAGTTTCTTGTCAGATTGCTTCGTCGAGCACAGTGTTGTTGGCATCCGG
rJMSF032K01+          ATATCTCATGGTAGTTTCTTGTCAGATTGCTTCGTCGAGCACAGTGTTGTTGGCATCCGG
rJMSF031P07+          ATATCTCATGGTAGTTTCTTGTCAGATTGCTTCGTCGAGCACAGTGTTGTTGGCATCCGG
                      ____________________________________________________________
consensus             ATATCTCATGGTAGTTTCTTGTCAGATTGCTTCGTCGAGCACAGTGTTGTTGGCATCCGG
 
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rJMFF019M14+          TCGCGAATCAATTCGAATGTTCATTTGAAGGATACAGTCATGCTGGGGGCAGATTTCTAT
rJMSF050F03+          TCGCGAATCAATTCGAATGTTCATTTGAAGGATACAGTCATGCTGGGGGCAGATTTCTAT
rJMSF032K01+          TCGCGAATCAATTCGAATGTTCATTTGAAGGATACAGTCATGCTGGGGGCAGATTTCTAT
rJMSF031P07+          TCGCGAATCAATTCGAATGTTCATTTGAAGGATACAGTCATGCTGGGGGCAGATTTCTAT
                      ____________________________________________________________
consensus             TCGCGAATCAATTCGAATGTTCATTTGAAGGATACAGTCATGCTGGGGGCAGATTTCTAT
 
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rJMFF019M14+          GAAACGAGCGCCGAGATTGACTCCCTCTTAAAAGAGGGAGGAGTGCCCATTGGAATTGGA
rJMSF050F03+          GAAACGAGCGCCGAGATTGACTCCCTCTTAAAAGAGGGAGGAGTGCCCATTGGAATTGGA
rJMSF032K01+          GAAACGAGCGCCGAGATTGACTCCCTCTTAAAAGAGGGAGGAGTGCCCATTGGAATTGGA
rJMSF031P07+          GAAACGAGCGCCGAGATTGACTCCCTCTTAAAAGAGGGAGGAGTGCCCATTGGAATTGGA
                      ____________________________________________________________
consensus             GAAACGAGCGCCGAGATTGACTCCCTCTTAAAAGAGGGAGGAGTGCCCATTGGAATTGGA
 
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rJMFF019M14+          GAAAATTCAAGAATCAAGGAATGCATCATTGACAAGAATGCTAGAATTGGGAAGAACGTT
rJMSF050F03+          GAAAATTCAAGAATCAAGGAATGCATCATTGACAAGAATGCTAGAATTGGGAAGAACGTT
rJMSF032K01+          GAAAATTCAAGAATCAAGGAATGCATCATTGACAAGAATGCTAGAATTGGGAAGAACGTT
rJMSF031P07+          GAAAATTCAAGAATCAAGGAATGCATCATTGACAAGAATGCTAGAATTGGGAAGAACGTT
                      ____________________________________________________________
consensus             GAAAATTCAAGAATCAAGGAATGCATCATTGACAAGAATGCTAGAATTGGGAAGAACGTT
 
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rJMFF019M14+          GTCATTGCAAACTCAGAGGGTGTACAAGAAGCTGACAGGACTTCAGAAGGATTCTACATA
rJMSF050F03+          GTCATTGCAAACTCAGAGGGTGTACAAGAAGCTGACAGGACTTCAGAAGGATTCTACATA
rJMSF032K01+          GTCATTGCAAACTCAGAGGGTGTACAAGAAGCTGACAGGACTTCAGAAGGATTCTACATA
rJMSF031P07+          GTCATTGCAAACTCAGAGGGTGTACAAGAAGCTGACAGGACTTCAGAAGGATTCTACATA
                      ____________________________________________________________
consensus             GTCATTGCAAACTCAGAGGGTGTACAAGAAGCTGACAGGACTTCAGAAGGATTCTACATA
 
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rJMFF019M14+          CGTTCAGGTGTTACTGTCATATTTAAAAACTCAACCATCCCTGATGGATTGGTCATATAA
rJMSF050F03+          CGTTCAGGTGTTACTGTCATATTTAAAAACTCAACCATCCCTGATGGATTGGTCATATAA
rJMSF032K01+          CGTTCAGGTGTTACTGTCATATTTAAAAACTCAACCATCCCTGATGGATTGGTCATATAA
rJMSF031P07+          CGTTCAGGTGTTACTGTCATATTTAAAAACTCAACCATCCCTGATGGATTGGTCATATAA
                      ____________________________________________________________
consensus             CGTTCAGGTGTTACTGTCATATTTAAAAACTCAACCATCCCTGATGGATTGGTCATATAA
 
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rJMFF019M14+          TCATATGCATCATTTCAACTGGATCTTCATCTTCTTTTCCCCTGATAGAGCATTTTAAGC
rJMSF050F03+          TCATATGCATCATTTCAACTGGATCTTCATCTTCTTTTCCCCTGATAGAGCATTTTAAGC
rJMSF032K01+          TCATATGCATCATTTCAACTGGATCTTCATCTTCTTTTCCCCTGATAGAGCATTTTAAGC
rJMSF031P07+          TCATATGCATCATTTCAACTGGATCTTCATCTTCTTTTCCCCTGATAGAGCATTTTAAGC
                      ____________________________________________________________
consensus             TCATATGCATCATTTCAACTGGATCTTCATCTTCTTTTCCCCTGATAGAGCATTTTAAGC
 
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rJMFF019M14+          ATATTGTAAATTTTGAATGTA-CTTCGTGTCTTCATTGTATTCCAAC             
rJMSF050F03+          ATATTGTAAATTTTGAATGTA-CTTCGTGTCTTCATTGTATTCCAAC             
rJMSF032K01+          ATATTGTAAATTTTGAATGTA-CTTCGTGTCTTCATTGTATTCCAACTTTATTCTTTTTG
rJMSF031P07+          ATATTGTAAATTTTGAATGTAGCTTCGTGTCTTCATTGTATTCCAACTTTATTCTTTTTG
                      ____________________________________________________________
consensus             ATATTGTAAATTTTGAATGTA-CTTCGTGTCTTCATTGTATTCCAACTTTATTCTTTTTG