Contig 001411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031N01Sequence652003817 (3)ref|XP_011044532.1|5e-94PREDICTED: double-strand break repair protein MRE11 isoform X2 [Populus euphrat712001411 (3)ref|XP_009787661.1|6e-35PREDICTED: double-strand break repair protein MRE11 isoform X2 [Nicotiana sylve
JMSF039L07Sequence664001411 (3)
JMSF039M07Sequence344003817 (3)ref|XP_010644252.1|3e-13PREDICTED: double-strand break repair protein MRE11 isoform X3 [Vitis vinifera]675001411 (3)ref|XP_009787660.1|3e-29PREDICTED: double-strand break repair protein MRE11 isoform X1 [Nicotiana sylve

Alignment

This contig is upended


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rJMSF039M07+                              TNTAGTGGGCAATCCTCAGAGATCAGAAGTAAAATTATTA
                      ____________________________________________________________
consensus                                 TNTAGTGGGCAATCCTCAGAGATCAGAAGTAAAATTATTA
 
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rJMSF039M07+          GAGGCATTGAAAGTGCAGTTTCCTTCAGTGATGATGAGGACACAACTCCTTTATNTGCCT
rJMSF039L07+                                 TTCAGTGATGNTGAGGNCACAACTCCTTTATCNGCCT
rJMSF031N01+                 TGAAAGTGCAGTTTCCTTCAGTGATGATGAGGACACAACTCCTTTATCTGCCT
                      ____________________________________________________________
consensus             GAGGCATTGAAAGTGCAGTTTCCTTCAGTGATGATGAGGACACAACTCCTTTATCTGCCT
 
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rJMSF039M07+          CAAAGTCTACTGCCAATAAGGGCAAGAAAGAGTTATCACAATCTTTTAGGTCCTCTCACG
rJMSF039L07+          CAAAGTCTACTGCCNATAAGGGCAAGAAAGAGTNATCACNNTCTTNTAGGTCCTCTCNCG
rJMSF031N01+          CAAAGTCTACTGCCAATAAGGGCAAGAAAGAGTTATCACAATCTTTTAGGTCCTCTCACG
                      ____________________________________________________________
consensus             CAAAGTCTACTGCCAATAAGGGCAAGAAAGAGTTATCACAATCTTTTAGGTCCTCTCACG
 
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rJMSF039M07+          ATGNTTCTGAAGTGGGCAAAACTTCAAGAGGAAGGGGCCGGGGGAGAGGCAGAGGCAGAG
rJMSF039L07+          ATGCTTCTGAANTGGGCAAANCTTCAAGAGGAAGGGGCCGGGNGAGAGGCNGAGGCNGAG
rJMSF031N01+          ATGCTTCTGAAGTGGGCAAAACTTCAAGAGGAAGGGGCCGGGGGAGAGGCAGAGGCAGAG
                      ____________________________________________________________
consensus             ATGCTTCTGAAGTGGGCAAAACTTCAAGAGGAAGGGGCCGGGGGAGAGGCAGAGGCAGAG
 
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rJMSF039M07+          GCAGGGCTTCTNGCAATTTAAAGCAGACAACACTTGATACATCAATGGGATTTCGTCATT
rJMSF039L07+          GCAGGGCTTCTANCAATTTAAAGCAGTCAACCCTTGATACATCAATGGGATTTCGTCATT
rJMSF031N01+          GCAGGGCTTCTAGCAATTTAAAGCAGACAACACTTGATACATCAATGGGATTTCGTCATT
                      ____________________________________________________________
consensus             GCAGGGCTTCTAGCAATTTAAAGCAGACAACACTTGATACATCAATGGGATTTCGTCATT
 
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rJMSF039M07+          CACAAATATCTTCATCAGTTCGAAGCATTGCNGAGGATGAAGAGAACGTGGACTNTGATT
rJMSF039L07+          CACNANTATCTTCNTCAGTTCGAAGCATTGCAGAGGATGAAGAGANCNTGGACTCTGATT
rJMSF031N01+          CACAAATATCTTCATCAGTTCGAAGCATTGCAGAGGATGAAGAGAACGTGGACTCTGATT
                      ____________________________________________________________
consensus             CACAAATATCTTCATCAGTTCGAAGCATTGCAGAGGATGAAGAGAACGTGGACTCTGATT
 
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rJMSF039M07+          CAAGTGATGAAAAAGCTGAGAATGAAATAAATGATGTCGATGATAGCTTNGATGATGAAA
rJMSF039L07+          CAAGTGATGAAAAAGCTGANAATGAAATAAANGATGTCGANGATAGCTTGGATGATGAAA
rJMSF031N01+          CAAGTGATGAAAAAGCTGAGAATGAAATAAATGATGTCGATGATAGCTTGGATGATGAAA
                      ____________________________________________________________
consensus             CAAGTGATGAAAAAGCTGAGAATGAAATAAATGATGTCGATGATAGCTTGGATGATGAAA
 
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rJMSF039M07+          GTGTTCAAGGCAAAGGCCGCAAAAGGGCTGCCCCACGGGGAAAAGGTAGAGGTACATCCT
rJMSF039L07+          GTGTTCAAGGCAAAGGCCGCAAAAGGGCTGCCCCNCGGGGAAAAGGTAGAGGTACATCCT
rJMSF031N01+          GTGTTCAAGGCAAAGGCCGCAAAAGGGCTGCCCCACGGGGAAAAGGTAGAGGTACATCCT
                      ____________________________________________________________
consensus             GTGTTCAAGGCAAAGGCCGCAAAAGGGCTGCCCCACGGGGAAAAGGTAGAGGTACATCCT
 
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rJMSF039M07+          CNGCTAAGAGAGGAAAGAAGTCAGATAATGCTCCTTCAATTCAAAGGATGCTTATGAATT
rJMSF039L07+          CAGNTANGAGAGGAAAGAAGTCAGCTAATGCTCCTTCAATTCNAAGGATGCTTATGAATT
rJMSF031N01+          CAGCTAAGAGAGGAAAGAAGTCAGATAATGCTCCTTCAATTCAAAGGATGCTTATGAATT
                      ____________________________________________________________
consensus             CAGCTAAGAGAGGAAAGAAGTCAGATAATGCTCCTTCAATTCAAAGGATGCTTATGAATT
 
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rJMSF039M07+          TAGATGATGAAGATGATGACGATGAAGTGCAAAAGAAATCAAACAAACCTCCACCTCGTG
rJMSF039L07+          TAGATGATGAAGATGATGACGATGAAGTGCAAAAGAAATCTAACAAACCTCCACCTCGTG
rJMSF031N01+          TAGATGATGAAGATGATGACGATGAAGTGCAAAAGAAATCAAACAAACCTCCACCTCGTG
                      ____________________________________________________________
consensus             TAGATGATGAAGATGATGACGATGAAGTGCAAAAGAAATCAAACAAACCTCCACCTCGTG
 
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rJMSF039M07+          TAACAAGGAACTCCGGTGCTCTAAGGAGGTGAGGTGAGCGCCACACAATCCCAGATTGNT
rJMSF039L07+          TAACAAGGAACTACGGTGCTCTAAGGAGGTGAGGTGAGCGCCACACAA-CCCAGATTGCT
rJMSF031N01+          TAACAAGGAACTACGGTGCTCTAAGGAGGTGAGGTGAGCGCCACACAA-CCCAGATTGCT
                      ____________________________________________________________
consensus             TAACAAGGAACTACGGTGCTCTAAGGAGGTGAGGTGAGCGCCACACAA-CCCAGATTGCT
 
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rJMSF039M07+          AGATCAATTGTGGTGCATT                                         
rJMSF039L07+          AGATCAATTGTGGTGCATTACAGNTTAATTATAGGTAGGGGGGGCTGCGTAACTTTAGCT
rJMSF031N01+          AGATCAATTGTGGTGCATTACAGTTTAATTATAGGTA-GGGGGGCTGCGTAA-TTTAGCT
                      ____________________________________________________________
consensus             AGATCAATTGTGGTGCATTACAGTTTAATTATAGGTAGGGGGGGCTGCGTAACTTTAGCT
 
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rJMSF039L07+          GTAAATTTTGGAAGGGGAAAAAAATACA                                
rJMSF031N01+          GTAAATTTTGGAAGGGGAAAAAAATACAAAACCAACGTGAGAAACGGCTTGGCAGTCGAA
                      ____________________________________________________________
consensus             GTAAATTTTGGAAGGGGAAAAAAATACAAAACCAACGTGAGAAACGGCTTGGCAGTCGAA