Contig 001409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031A11Sequence655002330 (3)gb|KDO85205.1|3e-29hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti758001409 (2)ref|XP_006355276.1|353PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum]
JMSF032O07Sequence695002330 (3)gb|KDO85205.1|5e-37hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti691001409 (2)ref|XP_006355276.1|313PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF031A11+                                ATNTGATAGAAGAGGCATCTCTAGTCCTCTTAAGTATG
                      ____________________________________________________________
consensus                                   ATNTGATAGAAGAGGCATCTCTAGTCCTCTTAAGTATG
 
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rJMSF032O07+                                   TAAGGTCAGTAAGAGCAATTCAACTGTTGAGATGG
rJMSF031A11+          AAGACCCATTTAATAACCCAATGGTTAAGGTCAGTAAGAGCAATTCAACTGTTGAGATGG
                      ____________________________________________________________
consensus             AAGACCCATTTAATAACCCAATGGTTAAGGTCAGTAAGAGCAATTCAACTGTTGAGATGG
 
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rJMSF032O07+          GTGGCAAAGTGTACCGTTTAGCACCAGTTACTCTTACAAGGGAACAACAAGCGATACATC
rJMSF031A11+          GTGGCAAAGTGTACCGTTTAGCACCAGTTACTCTTACAAGGGAACAACAAGCGATACATC
                      ____________________________________________________________
consensus             GTGGCAAAGTGTACCGTTTAGCACCAGTTACTCTTACAAGGGAACAACAAGCGATACATC
 
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rJMSF032O07+          AGAAAAGGAGGTCGCGTGCCTATCAGTGGAAGAGGCCGACATTGTTTCTTAGGGAAGGTG
rJMSF031A11+          AGAAAAGGAGGTCGCGTGCCTATCAGTGGAAGAGGCCGACATTGTTTCTTAGGGAAGGTG
                      ____________________________________________________________
consensus             AGAAAAGGAGGTCGCGTGCCTATCAGTGGAAGAGGCCGACATTGTTTCTTAGGGAAGGTG
 
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rJMSF032O07+          ATTCAATACCTCCTGATGTGGACCCTGATACGATCAGGTGGATTCCAGCAAATCATCCTT
rJMSF031A11+          ATTCAATACCTCCTGATGTGGACCCTGATACGATCAGGTGGATTCCAGCAAATCATCCTT
                      ____________________________________________________________
consensus             ATTCAATACCTCCTGATGTGGACCCTGATACGATCAGGTGGATTCCAGCAAATCATCCTT
 
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rJMSF032O07+          TTGCAACCACAGAAAGTGAGATTGATGAAGATCTGGCACAAAATAATGTTTATCAAAAGC
rJMSF031A11+          TTGCAACCACAGAAAGTGAGATTGATGAAGATCTGGCACAAAATAATGTTTATCAAAAGC
                      ____________________________________________________________
consensus             TTGCAACCACAGAAAGTGAGATTGATGAAGATCTGGCACAAAATAATGTTTATCAAAAGC
 
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rJMSF032O07+          ATGGCGTTCCGTTTCGTATCCAGGCAGAGCATGAGGCTCTGCAGAGAAAGCTTGAGGCAC
rJMSF031A11+          ATGGCGTTCCGTTTCGTATCCAGGCAGAGCATGAGGCTCTGCAGAGAAAGCTTGAGGCAC
                      ____________________________________________________________
consensus             ATGGCGTTCCGTTTCGTATCCAGGCAGAGCATGAGGCTCTGCAGAGAAAGCTTGAGGCAC
 
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rJMSF032O07+          TTCAAAGTGAGCAGAAACTTAACAAACTAGTAATAGACCCTGCCACTGCCAAAGATTTTG
rJMSF031A11+          TTCAAAGTGAGCAGAAACTTAACAAACTAGTAATAGACCCTGCCACTGCCAAAGATTTTG
                      ____________________________________________________________
consensus             TTCAAAGTGAGCAGAAACTTAACAAACTAGTAATAGACCCTGCCACTGCCAAAGATTTTG
 
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rJMSF032O07+          AGAGGCCATTTAAAGCAAGAATGAAGTCAGAGGATCAGATTGAACAGAGCCCACACAATC
rJMSF031A11+          AGAGGCCATTTAAAGCAAGAATGAAGTCAGAGGATCAGATTGAACAGAGCCCACACAATC
                      ____________________________________________________________
consensus             AGAGGCCATTTAAAGCAAGAATGAAGTCAGAGGATCAGATTGAACAGAGCCCACACAATC
 
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rJMSF032O07+          GTCAGATGGGATCTAAGTTTTCTGAGCCAAATCCTGCCCGAGATTCTAGTGCAAGCAAAC
rJMSF031A11+          GTCAGATGGGATCTAAGTTTTCTGAGCCAAATCCTGCCCGAGATTCTAGTGCAAGCAAAC
                      ____________________________________________________________
consensus             GTCAGATGGGATCTAAGTTTTCTGAGCCAAATCCTGCCCGAGATTCTAGTGCAAGCAAAC
 
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rJMSF032O07+          CGGCTACTGAGGAGACGCAGAAGCCTTAGGCACATCATTTGCTTGCAACTACGAGATTTT
rJMSF031A11+          CGGCTACTGAGGAGACGCAGAAGCCTTAGGCACATCATTTGCTTGCAACTACGAGATTTT
                      ____________________________________________________________
consensus             CGGCTACTGAGGAGACGCAGAAGCCTTAGGCACATCATTTGCTTGCAACTACGAGATTTT
 
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rJMSF032O07+          GATATGTAACATAAGAAAAGCGCGTTCCTTTTTCTAGCCTAGACGCGGTGAACCACATAT
rJMSF031A11+          GATATGTAACATAAGAAAAGCGCGTTCCTTTTTCTAGCCTAGACGCGGTGAACCACATAT
                      ____________________________________________________________
consensus             GATATGTAACATAAGAAAAGCGCGTTCCTTTTTCTAGCCTAGACGCGGTGAACCACATAT
 
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rJMSF032O07+          TGAGTTGAAAAGATGTATGTCTGTATGTATAGGAATGTCGACAAGAACCAGTATGT    
rJMSF031A11+          TGAGTTGAAAAGATGTATGTCTGTATGTATAGGAATGTCGACAAGAACCAGTATGTGTGT
                      ____________________________________________________________
consensus             TGAGTTGAAAAGATGTATGTCTGTATGTATAGGAATGTCGACAAGAACCAGTATGTGTGT