Contig 001407:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF017M01+                                                              AAGGCCTT
                      ____________________________________________________________
consensus                                                                 AAGGCCTT
 
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rJMSF017M01+          GGAAAAATGATGAGATTGAAGAACAGCTTTGGTGGCGTGTTGAATCAGGTGACTAGTCTC
                      ____________________________________________________________
consensus             GGAAAAATGATGAGATTGAAGAACAGCTTTGGTGGCGTGTTGAATCAGGTGACTAGTCTC
 
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rJMSF017M01+          TTAGGCGTTGGTAGTGAATATGGTGAGGATGCTATCCTTGGAAGGCTCGAGGGGATGAAA
                      ____________________________________________________________
consensus             TTAGGCGTTGGTAGTGAATATGGTGAGGATGCTATCCTTGGAAGGCTCGAGGGGATGAAA
 
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rJMSF017M01+          GAGATAATTGAAAAAGTTAACAAGCAGTTCAAGGATCCGGACTTGACGACATTTGTCTGT
rJMSF030N24+                                                GGACTNGACGACATTTGTCTGT
                      ____________________________________________________________
consensus             GAGATAATTGAAAAAGTTAACAAGCAGTTCAAGGATCCGGACTTGACGACATTTGTCTGT
 
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rJMSF017M01+          GTTTGCATTCCGGAATTCTTGTCGCTGTATGAGACTGAAAGGCTTGTGCAGGAACTCACG
rJMSF030N24+          GTTTGCATT-CGGAATTCTTGTCGCTGTATGAGACTGAAAGGCNTGTGCAGGAACTCACG
                      ____________________________________________________________
consensus             GTTTGCATTCCGGAATTCTTGTCGCTGTATGAGACTGAAAGGCTTGTGCAGGAACTCACG
 
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rJMSF017M01+          AAATTTGATATTGATACACACAACATCATTATTAACCAAGTGATTTTTCAAGACGAAGCT
rJMSF030N24+          AAATTTGATATTGATACACACAACATCATTATTAACCAAGTGATTTTTCAAGACGAAGCT
                      ____________________________________________________________
consensus             AAATTTGATATTGATACACACAACATCATTATTAACCAAGTGATTTTTCAAGACGAAGCT
 
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rJMSF017M01+          GTCGAGTCCAAGTTGCTCAAGGCTAGAATGCGGATGCAAGAAAAGTACTTAAATCAGTTC
rJMSF030N24+          GTCGAGTCCAAGTTGCTCAAGGCTAGAATGCGGATGCAAGAAAAGTACTTAAATCAGTTC
                      ____________________________________________________________
consensus             GTCGAGTCCAAGTTGCTCAAGGCTAGAATGCGGATGCAAGAAAAGTACTTAAATCAGTTC
 
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rJMSF017M01+          TACATTTTATATGATGACTTCAACATTACTAAATTGCCTTTGCTGCCACAAGAGGTTTGT
rJMSF030N24+          TACATTTTATATGATGACTTCAACATTACTAAATTGCCTTTGCTGCCACAAGAGGTTTGT
                      ____________________________________________________________
consensus             TACATTTTATATGATGACTTCAACATTACTAAATTGCCTTTGCTGCCACAAGAGGTTTGT
 
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rJMSF017M01+          GGTGTTGAAGCTCTCAAGGCATTTTCGCACAATTTTACAACACCATACCAACCTTCTCTT
rJMSF030N24+          GGTGTTGAAGCTCTCAAGGCATTTTCGCACAATTTTACAACACCATACCAACCTTCTCTT
                      ____________________________________________________________
consensus             GGTGTTGAAGCTCTCAAGGCATTTTCGCACAATTTTACAACACCATACCAACCTTCTCTT
 
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rJMSF017M01+          GTCCGAGGCTCGGTTGAAGAGCTGGAGCAACGGGTATCTGTATTAAGGGAACAATTGAAA
rJMSF030N24+          GTCCGAGGCTCGGTTGAAGAGCTGGAGCAACGGGTATCTGTATTAAGGGAACAATTGAAA
                      ____________________________________________________________
consensus             GTCCGAGGCTCGGTTGAAGAGCTGGAGCAACGGGTATCTGTATTAAGGGAACAATTGAAA
 
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rJMSF017M01+          GATGCGGAAGTGGAACTAGAAAAGCTTAGAAAAGGGAAACAGAAGGCATGAGCTCCGGAG
rJMSF030N24+          GATGCGGAAGTGGAACTAGAAGAGCTTAGAAAAGGGAAACAGAAGGCATGAGCTCCGGAG
                      ____________________________________________________________
consensus             GATGCGGAAGTGGAACTAGAAGAGCTTAGAAAAGGGAAACAGAAGGCATGAGCTCCGGAG
 
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rJMSF017M01+          GGCCAACATCATCTTCTTTTGTTTTTTGCTCTGCTTTAACATATTTTTGGATGTCTCTCT
rJMSF030N24+          GGCCAACATCATCTTCTTTTGTTTTTTGCTCTGCTTTAACATATTTTTGGATGTCTCTCT
                      ____________________________________________________________
consensus             GGCCAACATCATCTTCTTTTGTTTTTTGCTCTGCTTTAACATATTTTTGGATGTCTCTCT
 
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rJMSF017M01+          CTCTCTCTCTCTCAAATATGGAATGATTTGTTCTATTAATTCATAGCTACTTTGATATTA
rJMSF030N24+          CTCTCTCTCTCTCAAATATGGAATGATTTGTTCTATTAATTCATAGCTACTTTGATATTA
                      ____________________________________________________________
consensus             CTCTCTCTCTCTCAAATATGGAATGATTTGTTCTATTAATTCATAGCTACTTTGATATTA
 
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rJMSF017M01+          CTCAATAATTTGTAT                                             
rJMSF030N24+          CTCAATAATTTGTATTGGTTTCTTGTATGCTGTGAGAAATGACAAATGAGTTTATTTAGA
                      ____________________________________________________________
consensus             CTCAATAATTTGTATTGGTTTCTTGTATGCTGTGAGAAATGACAAATGAGTTTATTTAGA
 
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rJMSF030N24+          CATTAGCCTATTAGCTTGAGGTGAAATCAGAGGACAATTATGAATGAATATCATAGGAAC
                      ____________________________________________________________
consensus             CATTAGCCTATTAGCTTGAGGTGAAATCAGAGGACAATTATGAATGAATATCATAGGAAC