| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF025O17 | Sequence | 617 | 013126 (4) | emb|CDO98618.1| | 1e-07 | unnamed protein product [Coffea canephora] | 790 | 001406 (2) | gb|AJC00855.1| | 2e-119 | cyclic nucleotide gated channel CNGC15 [Solanum lycopersicum] |
| JMSF030K03 | Sequence | 652 | 015777 | ref|XP_009761450.1| | 9e-45 | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isofo | 726 | 001406 (2) | ref|XP_009587296.1| | 4e-99 | PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Nico |
This contig is upended
. : . : . : . : . : . :
rJMFF025O17+ CGCTTGCCAGAGGGATTAAGAAGGC
____________________________________________________________
consensus CGCTTGCCAGAGGGATTAAGAAGGC
. : . : . : . : . : . :
rJMFF025O17+ GAGTACGACTAGCTGAACGCTATACATGGGCAGCTACCAGAGGGGTGAATGAAGAAATGT
____________________________________________________________
consensus GAGTACGACTAGCTGAACGCTATACATGGGCAGCTACCAGAGGGGTGAATGAAGAAATGT
. : . : . : . : . : . :
rJMFF025O17+ TGTTGGAGAACCTACCTGAAGACGTACAAAGAGATATAAGAAGGCATCTTTTTAAATTTA
rJMSF030K03+ TTAAATTTG
____________________________________________________________
consensus TGTTGGAGAACCTACCTGAAGACGTACAAAGAGATATAAGAAGGCATCTTTTTAAATTTG
. : . : . : . : . : . :
rJMFF025O17+ TCAAGAAGGTCCGCATTTTTGCACTTGTAGATGAGCTAGTCTTAGATGCTATTTGTGAAA
rJMSF030K03+ TCAAGAAGGTCCACATTTTTGCACTGCTAGATGAGCCAATCTTGGATGCCATTTGTGAAA
____________________________________________________________
consensus TCAAGAAGGTCCGCATTTTTGCACTTGTAGATGAGCTAGTCTTGGATGCTATTTGTGAAA
. : . : . : . : . : . :
rJMFF025O17+ GGTTAAGACTAACAACGTATATAGAAGGAAGCAAAGTTTTCTACCGAGGTGGTCTTATTG
rJMSF030K03+ GATTAAGACAAAAGACATATATAAAAGGAAGCAGGGTTTTGTACCAAGGTGGTCTCATCG
____________________________________________________________
consensus GGTTAAGACTAACGACGTATATAGAAGGAAGCAGGGTTTTGTACCGAGGTGGTCTTATTG
. : . : . : . : . : . :
rJMFF025O17+ ACAAGATGGTTTTCATCATCCGGGGAAAGATGGAAAGCACAGGAGAAGATGGAAACGTGG
rJMSF030K03+ ACAAGATGGTTTTCATCATCCGGGGAAACATGGAAAGCATCGGAGAGGATGGAAATGCGA
____________________________________________________________
consensus ACAAGATGGTTTTCATCATCCGGGGAAAGATGGAAAGCATCGGAGAGGATGGAAATGTGG
. : . : . : . : . : . :
rJMFF025O17+ CCATGTTGTCTGAAGGGGATGCTTGTGGGGAAGAGCTCCTCACATGGTGCCTAGAACATT
rJMSF030K03+ GCATATTGTCTGAAGGGGATGCTTGTGGGGAAGAACTCCTCACATGGTGCCTAGAGCATT
____________________________________________________________
consensus GCATGTTGTCTGAAGGGGATGCTTGTGGGGAAGAGCTCCTCACATGGTGCCTAGAGCATT
. : . : . : . : . : . :
rJMFF025O17+ CCTCTTCTGTAAATAAAGATGGAATAAAGATGAAGATTCCAGGTGGACACAGGCTACTTA
rJMSF030K03+ ---CTTCCGTAAATAAAGATGGAAGAAAGATCAGAATTCCA---GGACCCAGGCTGCTTA
____________________________________________________________
consensus CCTCTTCTGTAAATAAAGATGGAATAAAGATGAGGATTCCAGGTGGACCCAGGCTGCTTA
. : . : . : . : . : . :
rJMFF025O17+ GTAACAGGATTGTAAAGTGCCTAAGCAATGTTGAAGCATTTATATTGCGAGAAGCAGATC
rJMSF030K03+ GTAATCGGGGCGTCGAGTGCCTAACTAACGTTGAAGCATTTATATTGCGGGCAGCAGACA
____________________________________________________________
consensus GTAATCGGGTTGTCGAGTGCCTAAGTAATGTTGAAGCATTTATATTGCGGGCAGCAGATC
. : . : . : . : . : . :
rJMFF025O17+ TTGAAGAAGTCATTTCTCTGTTTGCAAGATTCTTGAGGAACACCCGTGTTCAGGGTGCCA
rJMSF030K03+ TTGAAGAAGTCACTTCTCTGTTTGCAAGATTCTTGAGGAGCCCGCGGGTTCAGGGTGCCA
____________________________________________________________
consensus TTGAAGAAGTCATTTCTCTGTTTGCAAGATTCTTGAGGAGCCCGCGTGTTCAGGGTGCCA
. : . : . : . : . : . :
rJMFF025O17+ TAAGGTATGAATCTCCTTATTGGCGAGCCCTGGCAGCACGTTGCATTCAAGTTGCATGGA
rJMSF030K03+ TAAGGTATGCATCTCCTTATTGGAGAGGTCGGGCAGCAAGGTGCATTCAAGTTGCATGGA
____________________________________________________________
consensus TAAGGTATGCATCTCCTTATTGGCGAGGTCTGGCAGCACGTTGCATTCAAGTTGCATGGA
. : . : . : . : . : . :
rJMFF025O17+ GATATAGAAAGAAGCGTCTAAGTCGTGCAGA
rJMSF030K03+ GATATAGGAAGAAGCGTCAAAGTCGTGCAGATGGCGCCAGCCCACAACATTCTCTTAGAG
____________________________________________________________
consensus GATATAGGAAGAAGCGTCTAAGTCGTGCAGATGGCGCCAGCCCACAACATTCTCTTAGAG
. : . : . : . : . : . :
rJMSF030K03+ ACGAAAATCTGTTCATCAACTTGTAGATTGTAAATGTTTTTGTTGTGTACGTAACATTAT
____________________________________________________________
consensus ACGAAAATCTGTTCATCAACTTGTAGATTGTAAATGTTTTTGTTGTGTACGTAACATTAT
. : . : . : . : . : . :
rJMSF030K03+ AGTTTGTAAAAATTTTGTCTGTCAGCTTCTAGTTTGTCTCCCACAGGCATTATATTTGTA
____________________________________________________________
consensus AGTTTGTAAAAATTTTGTCTGTCAGCTTCTAGTTTGTCTCCCACAGGCATTATATTTGTA
. : . : . : . : . : . :
rJMSF030K03+ GTTTGTGTCTCCCATAGGCATTATATTTGTCATCCAATACGGACACAATTAATGTGCATA
____________________________________________________________
consensus GTTTGTGTCTCCCATAGGCATTATATTTGTCATCCAATACGGACACAATTAATGTGCATA