Contig 001403:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028D11Sequence448000158 (2)ref|XP_010264910.1|5e-20PREDICTED: protein PHR1-LIKE 1 isoform X1 [Nelumbo nucifera] ref|XP_010264911.1|620001403 (2)ref|XP_009781298.1|6e-41PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Nicotiana sylvestris]
JMSF030C21Sequence679000158 (2)ref|XP_009781298.1|4e-40PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Nicotiana sylvestris]681001403 (2)ref|XP_009781298.1|2e-43PREDICTED: protein PHR1-LIKE 1-like isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF030C21+                                                 CTATAAACCTGAATCATCAGA
                      ____________________________________________________________
consensus                                                    CTATAAACCTGAATCATCAGA
 
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rJMFF028D11+                                         GATGATTTTCCATCTCTGGACTTGAAAGC
rJMSF030C21+          AGCGTCTTCAGAGAAGAAACAGTCTGCTATTGATGATTTTCCATCTCTGGACTTGAAAGC
                      ____________________________________________________________
consensus             AGCGTCTTCAGAGAAGAAACAGTCTGCTATTGATGATTTTCCATCTCTGGACTTGAAAGC
 
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rJMFF028D11+          GGGTATTGAGATCACTGAAGCGCTGAGGTTACAGATGGAAGTACAAAAGCGGCTCCATGA
rJMSF030C21+          GGGTATTGAGATCACTGAAGCGCTGAGGTTACAGATGGAAGTACAAAAGCGGCTCCATGA
                      ____________________________________________________________
consensus             GGGTATTGAGATCACTGAAGCGCTGAGGTTACAGATGGAAGTACAAAAGCGGCTCCATGA
 
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rJMFF028D11+          GCAGCTCGAGATTCAACGAAACCTGCAGCTGAGGATTGAAGAACAAGGGCGATACCTCCA
rJMSF030C21+          GCAGCTCGAGATTCAACGAAACCTGCAGCTGAGGATTGAAGAACAAGGGCGATACCTCCA
                      ____________________________________________________________
consensus             GCAGCTCGAGATTCAACGAAACCTGCAGCTGAGGATTGAAGAACAAGGGCGATACCTCCA
 
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rJMFF028D11+          AATGATGTTTGAGAAGCAATTCAAGTCAATGCCAAATATCGATATGGGCAAGGGATCATC
rJMSF030C21+          AATGATGTTTGAGAAGCAATTCAAGTCAATGCCAAATATCGATATGGGCAAGGGATCATC
                      ____________________________________________________________
consensus             AATGATGTTTGAGAAGCAATTCAAGTCAATGCCAAATATCGATATGGGCAAGGGATCATC
 
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rJMFF028D11+          ACCCACAAGTGAGAACCCCGTTGCACAGTTGACCGATGGGGTTCAANCCTCCCCTGGCAA
rJMSF030C21+          ACCCACAAGTGAGAACCCCGTTGCACAGTTGACCGATGGGGTTCAAACCTCCCCTGGCAA
                      ____________________________________________________________
consensus             ACCCACAAGTGAGAACCCCGTTGCACAGTTGACCGATGGGGTTCAAACCTCCCCTGGCAA
 
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rJMFF028D11+          AAGCGATCCAGTAGCGAATCATCCAATGACGGGAGACAACGACTCAGCCAATGCAGTTGC
rJMSF030C21+          AAGCGATCCAGTAGCGAATCATCCAATGACGGGAGACAACGACTCAGCCAATGCAGTTGC
                      ____________________________________________________________
consensus             AAGCGATCCAGTAGCGAATCATCCAATGACGGGAGACAACGACTCAGCCAATGCAGTTGC
 
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rJMFF028D11+          ATCGGTGAATGACTCTCAGACGAGGGAAGAGAAACAAAAGGAACGCGAAACAGGAGAAGT
rJMSF030C21+          ATCGGTGAATGACTCTCAGACGAGGGAAGAGAAACAAAAGGAACGCGAAACAGGAGAAGT
                      ____________________________________________________________
consensus             ATCGGTGAATGACTCTCAGACGAGGGAAGAGAAACAAAAGGAACGCGAAACAGGAGAAGT
 
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rJMFF028D11+          TCCTGCCACTTCAAAGCGCGCCAAAGTAGATTAATAAAATATCATTTACCAATTCTTGAT
rJMSF030C21+          TCCTGCCACTTCAAAGCGCGCCAAAGTAGATTAATAAAATATCATTTACCAATTCTTGAT
                      ____________________________________________________________
consensus             TCCTGCCACTTCAAAGCGCGCCAAAGTAGATTAATAAAATATCATTTACCAATTCTTGAT
 
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rJMFF028D11+          ATTGCTAAGAACCTCCAGTTTTATTTGATGCTTGGAACATCAAAGCTTTCAGTAGTAAGT
rJMSF030C21+          ATTGCTAAGAACCTCCAGTTTTATTTGATGCTTGGAACATCAAAGCTTTCAGTAGTAAGT
                      ____________________________________________________________
consensus             ATTGCTAAGAACCTCCAGTTTTATTTGATGCTTGGAACATCAAAGCTTTCAGTAGTAAGT
 
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rJMFF028D11+          ACATAGTGAACTCCTCAGAACTTTTTGTTCATCTTTTTTAGACAAGTTCTGGTGGGAAAG
rJMSF030C21+          ACATAGTGAACTCCTCAGAACTTTTTGTTCATCTTTTTTAGACAAGTTCTGGTGGGAAAG
                      ____________________________________________________________
consensus             ACATAGTGAACTCCTCAGAACTTTTTGTTCATCTTTTTTAGACAAGTTCTGGTGGGAAAG
 
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rJMFF028D11+          CTGCATCCTCACCATACTGTAGTTGATAAGTGTAACTTATGAC                 
rJMSF030C21+          CTGCATCCTCACCATACTGTAGTTGATAAGTGTAACTTATGACCTTTTGTCCATTGTGAG
                      ____________________________________________________________
consensus             CTGCATCCTCACCATACTGTAGTTGATAAGTGTAACTTATGACCTTTTGTCCATTGTGAG