Contig 001401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026I10Sequence695001401 (3)ref|XP_009758507.1|2e-117PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri750001401 (3)ref|XP_010055992.1|2e-82PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Eucalyptus grandis]
JMSF030B12Sequence661017860ref|XP_009758507.1|5e-85PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri767001401 (3)ref|XP_009758507.1|1e-97PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF026I10-                        GAGTCAAATACCTTATCGGCTCCGCCGGCCCCAGCGGCTTCGGCTCC
                      ____________________________________________________________
consensus                          GAGTCAAATACCTTATCGGCTCCGCCGGCCCCAGCGGCTTCGGCTCC
 
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JMSF026I10-           AAATCGACCGCCGAGGAGGTTACCGAGATGAGTCCTCGTCTGTGCTCCGTCACCGCCATC
                      ____________________________________________________________
consensus             AAATCGACCGCCGAGGAGGTTACCGAGATGAGTCCTCGTCTGTGCTCCGTCACCGCCATC
 
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JMSF026I10-           ATCACTGGTGCGACGTCGGGAATCGGAGCGGAGACGGCTCGTGTGTTGGCCAAGCGCGGA
                      ____________________________________________________________
consensus             ATCACTGGTGCGACGTCGGGAATCGGAGCGGAGACGGCTCGTGTGTTGGCCAAGCGCGGA
 
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JMSF026I10-           GCACGCCTGGTGCTTCCGGCTCGGAGCGTGAAGGCCGCCGAGGAGACGAAGGCTCGTATT
                      ____________________________________________________________
consensus             GCACGCCTGGTGCTTCCGGCTCGGAGCGTGAAGGCCGCCGAGGAGACGAAGGCTCGTATT
 
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JMSF026I10-           CTGTCGGAGTCGCCGGGCGCGGAGATCGTCGTGATGCCGCTCGATCTTAGTTCTCTCGCT
                      ____________________________________________________________
consensus             CTGTCGGAGTCGCCGGGCGCGGAGATCGTCGTGATGCCGCTCGATCTTAGTTCTCTCGCT
 
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JMSF026I10-           TCTGTACGGAGGTTTGTTGCAGAGTTCGAATCTCTCCATCTGCCTCTCAATCTCCTCATA
rJMSF026I10+                                                                     A
rJMSF030B12+                                                                     A
                      ____________________________________________________________
consensus             TCTGTACGGAGGTTTGTTGCAGAGTTCGAATCTCTCCATCTGCCTCTCAATCTCCTCATA
 
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JMSF026I10-           AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
rJMSF026I10+          AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
rJMSF030B12+          AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
                      ____________________________________________________________
consensus             AACAATGCTGGAAAATTCGCGTACAAGCATTCAGTTTCAGAGGACGGCATCGAGATGAGT
 
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JMSF026I10-           TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
rJMSF026I10+          TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
rJMSF030B12+          TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
                      ____________________________________________________________
consensus             TTCGCCACTAACTATCTAGGCCATTTCCTACTAACGAAGCTACTGCTCGGCAAGATGACG
 
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JMSF026I10-           GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
rJMSF026I10+          GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
rJMSF030B12+          GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
                      ____________________________________________________________
consensus             GAGACGGCGAAATCATCCGGCATTCAAGGGAGAATCGTGAATGTGTCCTCCGGCATCTAC
 
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JMSF026I10-           AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
rJMSF026I10+          AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
rJMSF030B12+          AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
                      ____________________________________________________________
consensus             AACTGGTTTCCCGACGACATTATCGCTTACTTCCGAGATGTAAGCAAGGACCCAAGTCTC
 
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JMSF026I10-           TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
rJMSF026I10+          TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
rJMSF030B12+          TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
                      ____________________________________________________________
consensus             TACGACCCGACACGTGCGTACGCTCTATCGAAGCTGGCTACCTTTCTGCACACCAAAGAA
 
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JMSF026I10-           CTTGCTCAGANGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGT            
rJMSF026I10+          CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
rJMSF030B12+          CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
                      ____________________________________________________________
consensus             CTTGCTCAGAGGCTTAAACAAATGGAGGCAAACGTGACGGTGAACTGTGTTCACCCTGGG
 
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rJMSF026I10+          GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCG              
rJMSF030B12+          GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCGATTTAGCATTCTTT
                      ____________________________________________________________
consensus             GTTGTGAAAACTAGACTCAATCGCGAACGTGAAGGGTTCCTCACCGATTTAGCATTCTTT
 
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rJMSF030B12+          TTGGCTTCTAAGCTTTTGAAGACGATCCCTCAGGCTGCATCGACAACTTGTTATGTTGCA
                      ____________________________________________________________
consensus             TTGGCTTCTAAGCTTTTGAAGACGATCCCTCAGGCTGCATCGACAACTTGTTATGTTGCA
 
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rJMSF030B12+          ACTGATCCGAGGCTTGCAAATGAAAGCGGGAAATTCTTCGCAGATTGCAACGAGATTTCT
                      ____________________________________________________________
consensus             ACTGATCCGAGGCTTGCAAATGAAAGCGGGAAATTCTTCGCAGATTGCAACGAGATTTCT
 
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rJMSF030B12+          ATTTCTTCCAAGTTTGGGTTCAGTTTAACAGAAAATGCAAGGTTGTGGCAGGCTTCTGAT
                      ____________________________________________________________
consensus             ATTTCTTCCAAGTTTGGGTTCAGTTTAACAGAAAATGCAAGGTTGTGGCAGGCTTCTGAT
 
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rJMSF030B12+          GTATTGGTTTCACCACACTCAAATCCATTCCAAGGCTTAGTGTAAAACCAAACAACATCG
                      ____________________________________________________________
consensus             GTATTGGTTTCACCACACTCAAATCCATTCCAAGGCTTAGTGTAAAACCAAACAACATCG