Contig 001400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007A04Sequence314004726 (14)gb|KCW84421.1|3e-44hypothetical protein EUGRSUZ_B01270 [Eucalyptus grandis]755001400 (3)gb|EAZ07786.1|4e-64hypothetical protein OsI_30038 [Oryza sativa Indica Group]
JMSF030A11Sequence661018947ref|XP_009804116.1|3e-52PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-li753001400 (3)gb|EAZ07786.1|4e-64hypothetical protein OsI_30038 [Oryza sativa Indica Group]
JMSF038A16Sequence659022191gb|ABK25007.1|2e-81unknown [Picea sitchensis] gb|ACN40691.1| unknown [Picea sitchensis]908001400 (3)gb|EAZ07786.1|2e-63hypothetical protein OsI_30038 [Oryza sativa Indica Group]

Alignment

This contig is upended


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rJMSF038A16+            AAAATGAATTGCTGTTAAGTGCTGTGTTGTGCGTTTCTATTCTGGAGAGTTTGGTGGA
                      ____________________________________________________________
consensus               AAAATGAATTGCTGTTAAGTGCTGTGTTGTGCGTTTCTATTCTGGAGAGTTTGGTGGA
 
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rJMSF038A16+          TTTTTGGGGGGTCATTTTTAATAATCTAGTATATCTGCTCCCAGATATGGTGAGTCCTTC
                      ____________________________________________________________
consensus             TTTTTGGGGGGTCATTTTTAATAATCTAGTATATCTGCTCCCAGATATGGTGAGTCCTTC
 
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rJMSF038A16+          CCTGTATCAGCTGAAGCTCTTGATTCTAGTTTCTGTCTTCCAATTGGGAAAGCTAAAATT
rJMSF007A04+                                                                   ATT
rJMSF030A11+                                                                   ATT
                      ____________________________________________________________
consensus             CCTGTATCAGCTGAAGCTCTTGATTCTAGTTTCTGTCTTCCAATTGGGAAAGCTAAAATT
 
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rJMSF038A16+          GAGTGTGATGGAAAGGATGTGACAATCACTGCTTTCTCAAAAATGGTTGGTTATGCTCTC
rJMSF007A04+          GAGTGTGATGGAAAGGATGTGACAATCACTGCTTTCTCAAAAATGGTTGGTTATGCTCTC
rJMSF030A11+          GAGTGTGATGGAAAGGATGTGACAATCACTGCTTTCTCAAAAATGGTTGGTTATGCTCTC
                      ____________________________________________________________
consensus             GAGTGTGATGGAAAGGATGTGACAATCACTGCTTTCTCAAAAATGGTTGGTTATGCTCTC
 
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rJMSF038A16+          AAGGTTTGGCATTCTTTTACCAGGAAGTATTTTGATCCTTTACCCAACTTGGGTGAAATT
rJMSF007A04+          AAGGTTTGGCATTCTTTTACCAGGAAGTATTTTGATCCTTTACCCAACTTGGGTGAAATT
rJMSF030A11+          AAGGTTTGGCATTCTTTTACCAGGAAGTATTTTGATCCTTTACCCAACTTGGGTGAAATT
                      ____________________________________________________________
consensus             AAGGTTTGGCATTCTTTTACCAGGAAGTATTTTGATCCTTTACCCAACTTGGGTGAAATT
 
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rJMSF038A16+          TTTAACTTGTTCAGCAACAATCTTGATCTTTGCATACTGTAAAGCCACTATGCAAAACTA
rJMSF007A04+          TTTAACTTGTTCAGCAACAATCTTGATCTTTGCATACTGTAAAGCCACTATGCAAAACTA
rJMSF030A11+          TTTAACTTGTTCAGCAACAATCTTGATCTTTGCATACTGTAAAGCCACTATGCAAAACTA
                      ____________________________________________________________
consensus             TTTAACTTGTTCAGCAACAATCTTGATCTTTGCATACTGTAAAGCCACTATGCAAAACTA
 
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rJMSF038A16+          AAGTCCATTATTGTGCTGACTATGTCTATGCTTCTGTTTGCATTTCAAAATGAATTTAAC
rJMSF007A04+          AAGTCCATTATTGTGCTGACTATGTCTATGCTTCTGTTTGCATTTCAAAATGAATTTAAC
rJMSF030A11+          AAGTCCATTATTGTGCTGACTATGTCTATGCTTCTGTTTGCATTTCAAAATGAATTTAAC
                      ____________________________________________________________
consensus             AAGTCCATTATTGTGCTGACTATGTCTATGCTTCTGTTTGCATTTCAAAATGAATTTAAC
 
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rJMSF038A16+          TTGCTAGGCTGCTGAGATTCTTGCAAAGGAAGGAATCAGTGCTGAGATTATCAATTTGCG
rJMSF007A04+          TTGCTAGGCTGCTGAGATTCTTGCAAAGGAAGGAATCAGTGCTGAGATTATCAATTTGCG
rJMSF030A11+          TTGCTAGGCTGCTGAGATTCTTGCAAAGGAAGGAATCAGTGCTGAGATTATCAATTTGCG
                      ____________________________________________________________
consensus             TTGCTAGGCTGCTGAGATTCTTGCAAAGGAAGGAATCAGTGCTGAGATTATCAATTTGCG
 
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rJMSF038A16+          CTCAATCAGACCACTTGATAGATCTACAATCAATGCTTCTGTTAGGAAAACCAACAGACT
rJMSF007A04+          CTCAATCAGACCACTTGATAGATCTACAATCAATGCTTCTGTTAGGAAAACCAACAGACT
rJMSF030A11+          CTCAATCAGACCACTTGATAGATCTACAATCAATGCTTCTGTTAGGAAAACCAACAGACT
                      ____________________________________________________________
consensus             CTCAATCAGACCACTTGATAGATCTACAATCAATGCTTCTGTTAGGAAAACCAACAGACT
 
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rJMSF038A16+          GGTAACTGTGGAGGAAGCGTTTCCTCAACATGGTGTTGGCGCTGAGATCTGTGCAACTGT
rJMSF007A04+          GGTAACTGTGGAGGAAGCGTTTCCTCAACATGGTGTTGGCGCTGAGATCTGTGCAACTGT
rJMSF030A11+          GGTAACTGTGGAGGAAGCGTTTCCTCAACATGGTGTTGGCGCTGAGATCTGTGCAACTGT
                      ____________________________________________________________
consensus             GGTAACTGTGGAGGAAGCGTTTCCTCAACATGGTGTTGGCGCTGAGATCTGTGCAACTGT
 
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rJMSF038A16+          AGTTGAGGAAAGCTTTGAGTACCTTGATGCACCAGTTGAGAGGATAGCTGGGGCTGATGT
rJMSF007A04+          AGTTGAGGAAAGCTTTGAGTACCTTGATGCACCAGTTGAGAGGATAGCTGGGGCTGATGT
rJMSF030A11+          AGTTGAGGAAAGCTTTGAGTACCTTGATGCACCAGTTGAGAGGATAGCTGGGGCTGATGT
                      ____________________________________________________________
consensus             AGTTGAGGAAAGCTTTGAGTACCTTGATGCACCAGTTGAGAGGATAGCTGGGGCTGATGT
 
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rJMSF038A16+          GCCTATGCCTTATGCAGCAAATCTTGAAAGAATGGCTGTTCCACAGGTTGAAGACATTGT
rJMSF007A04+          GCCTATGCCTTATGCAGCAAATCTTGAAAGAATGGCTGTTCCACAGGTTGAAGACATTGT
rJMSF030A11+          GCCTATGCCTTATGCAGCAAATCTTGAAAGAATGGCTGTTCCACAGGTTGAAGACATTGT
                      ____________________________________________________________
consensus             GCCTATGCCTTATGCAGCAAATCTTGAAAGAATGGCTGTTCCACAGGTTGAAGACATTGT
 
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rJMSF038A16+          TCGTGCAGC                                                   
rJMSF007A04+          TCGTGCAGC                                                   
rJMSF030A11+          TCGTGCAGCAAAAAGGGCATGCTACAGATCAGTTGCTTAGGATATTTTGGCCCTGTTAAC
                      ____________________________________________________________
consensus             TCGTGCAGCAAAAAGGGCATGCTACAGATCAGTTGCTTAGGATATTTTGGCCCTGTTAAC
 
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rJMSF030A11+          ATTTTCATACGTTGTGGATATTGATTCTTTGTCTACATTGCGGCTTTCCTTTTGCTGCGT
                      ____________________________________________________________
consensus             ATTTTCATACGTTGTGGATATTGATTCTTTGTCTACATTGCGGCTTTCCTTTTGCTGCGT