| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004G24 | Sequence | 373 | 003770 (7) | ref|XP_010485236.1| | 3e-64 | PREDICTED: actin-4-like [Camelina sativa] | 781 | 001398 (4) | gb|AFD62266.1| | 5e-89 | actin, partial [Persea americana] |
| JMSF029P10 | Sequence | 677 | 003770 (7) | ref|XP_010446199.1| | 9e-92 | PREDICTED: actin-85C [Camelina sativa] | 720 | 001398 (4) | gb|AFD62266.1| | 3e-100 | actin, partial [Persea americana] |
| JMSF030P10 | Sequence | 678 | 003770 (7) | gb|KDP24628.1| | 8e-92 | hypothetical protein JCGZ_25544 [Jatropha curcas] | 245 | 001398 (4) | dbj|BAB60900.1| | 8e-27 | actin [Ipomoea nil] |
| JMSF034M12 | Sequence | 652 | 003770 (7) | ref|XP_010485236.1| | 6e-108 | PREDICTED: actin-4-like [Camelina sativa] | 727 | 001398 (4) | gb|AFD62266.1| | 2e-117 | actin, partial [Persea americana] |
This contig is upended
. : . : . : . : . : . :
rJMFF004G24+ TGCGG
rJMSF034M12+ GCGG
____________________________________________________________
consensus TGCGG
. : . : . : . : . : . :
rJMFF004G24+ AGCGTGAAATTGTGAGGGACATGAAGGAGAAGTTGTCNTACATTGCCCTTGACTATGAAC
rJMSF034M12+ AGCGTGAAATTGTGAGGGACATGAAGGAGAAGTTGTCCTACATTGCCCTTGACTATGAAC
____________________________________________________________
consensus AGCGTGAAATTGTGAGGGACATGAAGGAGAAGTTGTCCTACATTGCCCTTGACTATGAAC
. : . : . : . : . : . :
rJMFF004G24+ AGGAGCTAGAAGCATCGAAGACCAGCTCATCTGTTGAGAAGTCCTACGAGCTCCCCTGAT
rJMSF034M12+ AGGAGCTAGAAGCATCGAAGACCAGCTCATCTGTTGAGAAGTCCTACGAGCT-CCCTGAT
rJMSF029P10+ GAGCTAGAAGCATCGAAGACCAGCTCATCTGGTGAGAAGTCCTACGAGCT-CCCTGAT
____________________________________________________________
consensus AGGAGCTAGAAGCATCGAAGACCAGCTCATCTGTTGAGAAGTCCTACGAGCT-CCCTGAT
. : . : . : . : . : . :
rJMFF004G24+ GGGCAGGTGATCACCATTGGTAATGAGCGGTTCCGCTGCCCAGAGGTTCTGTTCCAGCCC
rJMSF034M12+ GGGCAGGTGATCACCATTGGTAATGAGCGGTTCCGCTGCCCAGAGGTTCTGTTCCAGCCC
rJMSF029P10+ GGGCAGGTGATCACCATTGGTAATGAGCGGTTCCGCTGCCCAGAGGTTCTGTTCCAGCCC
____________________________________________________________
consensus GGGCAGGTGATCACCATTGGTAATGAGCGGTTCCGCTGCCCAGAGGTTCTGTTCCAGCCC
. : . : . : . : . : . :
rJMFF004G24+ TCGATCATTGGGATGGAAGCTGCTGGCATTCATGAGACCACCTACAATTCTATCATGAAG
rJMSF034M12+ TCGATCATTGGGATGGAAGCTGCTGGCATTCATGAGACCACCTACAATTCTATCATGAAG
rJMSF029P10+ TCGATCATTGGGATGGAAGCTGCTGGCATTCATGAGACCACCTACAATTCTATCATGAAG
____________________________________________________________
consensus TCGATCATTGGGATGGAAGCTGCTGGCATTCATGAGACCACCTACAATTCTATCATGAAG
. : . : . : . : . : . :
rJMFF004G24+ TGCGACGTGGATATTAGGAAGGATCTGTATGGAAATATCGTCCTCAGTGGTGGTACCACC
rJMSF034M12+ TGCGACGTGGATATTAGGAAGGATCTGTATGGAAATATCGTCCTCAGTGGTGGTACCACC
rJMSF029P10+ TGCGACGTGGATATTAGGAAGGATCTGTATGGAAATATCGTCCTCAGTGGTGGTACCACC
____________________________________________________________
consensus TGCGACGTGGATATTAGGAAGGATCTGTATGGAAATATCGTCCTCAGTGGTGGTACCACC
. : . : . : . : . : . :
rJMFF004G24+ ATGTTCGGGGGCATTGCTGATAGAATGAGCAAGGAGATCACTGCATTGGCTCCAAGTAGC
rJMSF034M12+ ATGTTCGGGGGCATTGCTGATAGAATGAGCAAGGAGATCACTGCATTGGCTCCAAGTAGC
rJMSF030P10+ TCCAAGTAGC
rJMSF029P10+ ATGTTCGGGGGCATTGCTGATAGAATGAGCAAGGAGATCACTGCATTGGCTCCAAGTAGC
____________________________________________________________
consensus ATGTTCGGGGGCATTGCTGATAGAATGAGCAAGGAGATCACTGCATTGGCTCCAAGTAGC
. : . : . : . : . : . :
rJMFF004G24+ ATGAAGATCAAGGTTGTTGCTCCACCTGAGAGGAAGTATAGTGTTTGGATCGGTGGATCT
rJMSF034M12+ ATGAAGATCAAGGTTGTTGCTCCACCTGAGAGGAAGTATAGTGTTTGGATCGGTGGATCT
rJMSF030P10+ ATGAAGATCAAGNTTGTTGCTCCACNTGAGAGGAAGTATAGTGTTTGGATCGGTGGATCT
rJMSF029P10+ ATGAAGATCAAGGTTGTTGCTCCACCTGAGAGGAAGTATAGTGTTTGGATCGGTGGATCT
____________________________________________________________
consensus ATGAAGATCAAGGTTGTTGCTCCACCTGAGAGGAAGTATAGTGTTTGGATCGGTGGATCT
. : . : . : . : . : . :
rJMFF004G24+ ATTTTGGCCTCCCTCAGTACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAG
rJMSF034M12+ ATTTTGGCCTCCCTCAGTACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAG
rJMSF030P10+ ATTTTGGCCTCCCTCAGTACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTANGATGAG
rJMSF029P10+ ATTTTGGCCTCCCTCAGTACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAG
____________________________________________________________
consensus ATTTTGGCCTCCCTCAGTACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAG
. : . : . : . : . : . :
rJMFF004G24+ TCTGGTCCTTCCATTGTCCACAGAAAATGCTTCTAAGTACTGCATGCTGG
rJMSF034M12+ TCTGGTCCTTCCATTGTCCACAGAAAATGCTTCTAAGTACTGCATGCTGGCGAGGGCGAT
rJMSF030P10+ TNTGGTCCTTCCATTGTCCACAGAAAATGCTTCTAAGTACTGCACGCTGGCGAGGGCGAN
rJMSF029P10+ TCTGGTCCTTCCATTGTCCACAGAAAATGCTTCTAAGTACTGCATGCTGGCGAGGGCGAT
____________________________________________________________
consensus TCTGGTCCTTCCATTGTCCACAGAAAATGCTTCTAAGTACTGCATGCTGGCGAGGGCGAT
. : . : . : . : . : . :
rJMSF034M12+ GGAGAGGTTACAGGATGTCTTAGGGAGATTTTTTCTCATTAAATTGATTGCGGACTAGTG
rJMSF030P10+ GGAGAGGTTACAGGATGTCTTAGGGAGATTTTTTCTCATTAAATTGATNGCGGAC
rJMSF029P10+ GGAGAGGTTACAGGATGTCTTAGGGAGATTTTTTCTCATTAAATTGATTGCGGACTAGTG
____________________________________________________________
consensus GGAGAGGTTACAGGATGTCTTAGGGAGATTTTTTCTCATTAAATTGATTGCGGACTAGTG
. : . : . : . : . : . :
rJMSF034M12+ CTGCTGCTTCTTATTTGTTTCTTTTTTCTTCTTTTTCTTTTACACATTACTCGGTATCTT
rJMSF029P10+ CTGCTGCTTCTTATTTGTTTCTTTTTTCTTCTTTTTCTTTTACACATTACTCGGTATCTT
____________________________________________________________
consensus CTGCTGCTTCTTATTTGTTTCTTTTTTCTTCTTTTTCTTTTACACATTACTCGGTATCTT
. : . : . : . : . : . :
rJMSF034M12+ TCTTCTGTTCCTCTTTTTTGTTTTTGGCCGAGTTTTTGAAGGTTTGATCAGCGGACATAG
rJMSF029P10+ TCTTCTGTTCCTCTTTTTTGTTTTTGGCCGAGTTTTTGAAGGTTTGATCAGCGGACATAG
____________________________________________________________
consensus TCTTCTGTTCCTCTTTTTTGTTTTTGGCCGAGTTTTTGAAGGTTTGATCAGCGGACATAG
. : . : . : . : . : . :
rJMSF034M12+ GAAC
rJMSF029P10+ GAACAAAGTCATGCCAAAGTTTTAATGTTGATTTTCATGGGATTACTATGTAAGAAGAGT
____________________________________________________________
consensus GAACAAAGTCATGCCAAAGTTTTAATGTTGATTTTCATGGGATTACTATGTAAGAAGAGT