Contig 001396:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+                                    GNAGATATTGGTTCCTCGCCTCCTANTAATGATC
                      ____________________________________________________________
consensus                                       GNAGATATTGGTTCCTCGCCTCCTANTAATGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          CCAACCGCATGTTTGAAAACACCATTATGGTTTACAGCAGAAACGCCAAGTCTTGGAGAG
rJMSF029L20+                                              GCAGAAACGCCAAGTCTTGGAGAG
                      ____________________________________________________________
consensus             CCAACCGCATGTTTGAAAACACCATTATGGTTTACAGCAGAAACGCCAAGTCTTGGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          TGATTCCGGGTTTTTACTACAGTGAAAACTTTCCCCATGGTAATGGAGTTTTTCTCAACG
rJMSF029L20+          TGATTCCGGGTTTTAA-TACAGTGAAAACTTTCCCCATGGTAATGGAGTTTTTCTCAACG
                      ____________________________________________________________
consensus             TGATTCCGGGTTTTTACTACAGTGAAAACTTTCCCCATGGTAATGGAGTTTTTCTCAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          GAGTTGTTCACTTGGGAGGCAGTAGTCTCAGGTTGGGTTTTTGTTCGGAGATTTATGCGT
rJMSF029L20+          GAGTTGTTTACCTGGGAGGCAGTAGTCTCAGGTGGGGTTTTTGTTCGGAGATTTATGCGT
                      ____________________________________________________________
consensus             GAGTTGTTTACTTGGGAGGCAGTAGTCTCAGGTTGGGTTTTTGTTCGGAGATTTATGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          TTGATTTGGCGACAGAGACGCTTCGGACCATAACACTACCAGACAGCTACGAAGGCCAAA
rJMSF029L20+          TTGATTTGGCCACGGAGACGCTTCGGACCATAACACTACCAGACAGCTACGAAGACCAAA
                      ____________________________________________________________
consensus             TTGATTTGGCGACGGAGACGCTTCGGACCATAACACTACCAGACAGCTACGAAGGCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          GACCCTTTTGGAGATTAGGCGTCTTGGGTGGAAATATTCTGGTGGCCTGTTGCCAGTGCT
rJMSF029L20+          GACCCTTTTGGAGATTAGGCGTTTTGGGTGGAAATATTCTGGTGGCCTCTTGCCAGTGCT
                      ____________________________________________________________
consensus             GACCCTTTTGGAGATTAGGCGTTTTGGGTGGAAATATTCTGGTGGCCTGTTGCCAGTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          CTCCCGAGACGTTGCATATATGGGCGTTGAAGAACTATGGCATGGCGGAGGAATGTTGGG
rJMSF029L20+          CTCCCGAGACGTTGCATATATGGGCGTTGAAGAACTATGGCATGGCGGAGGAATGTTGGG
                      ____________________________________________________________
consensus             CTCCCGAGACGTTGCATATATGGGCGTTGAAGAACTATGGCATGGCGGAGGAATGTTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          GGAAATTGGTGTCGTTTTCATTGGATTACGATATCAGCATTTCGCCTGTGTTTGTGACCC
rJMSF029L20+          GGAAATTGGTGTCGTTTTCATTGGATTACGATATCAGCATTTCGCCTGTGTTTGTGACCC
                      ____________________________________________________________
consensus             GGAAATTGGTGTCGTTTTCATTGGATTACGATATCAGCATTTCGCCTGTGTTTGTGACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          AGAATGTGGATGAGGTTTTGCTGCAGTATGATCTGGACAAACTGCTTTTGTATAGGTTGA
rJMSF029L20+          AGAATGTGGATGAGGTTTTGCTGCAGTATGATCTGGACAAACTGCTTTTGTATAGGTTGA
                      ____________________________________________________________
consensus             AGAATGTGGATGAGGTTTTGCTGCAGTATGATCTGGACAAACTGCTTTTGTATAGGTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          GAGATGATTCTTCGCTGTTGATTCGAATGTTTCCTCCAAATAACCATCTTTTGGTTCAAA
rJMSF029L20+          GAGGTGATTCTTCGGCGCTGATTAAAATGTTTCCTCCAAATAACCATCTTTTGGTTCAAA
                      ____________________________________________________________
consensus             GAGGTGATTCTTCGGTGTTGATTCGAATGTTTCCTCCAAATAACCATCTTTTGGTTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C23+          TGGCTACCTACAATGAAAGCCTAGTTTCATATTCCTGATTCTGCTGTTCATATGTACAG 
rJMSF029L20+          TGGCTACCTACAATGAAAGCCTAGTTTCATATTCCTGATTCTGCTGTTCATATGTACAGC
                      ____________________________________________________________
consensus             TGGCTACCTACAATGAAAGCCTAGTTTCATATTCCTGATTCTGCTGTTCATATGTACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L20+          GTTAGTACGATGTGTGTGGTTTCCATTCCATTTGTACAAGTTCCACCTTTTGTTTGGGGA
                      ____________________________________________________________
consensus             GTTAGTACGATGTGTGTGGTTTCCATTCCATTTGTACAAGTTCCACCTTTTGTTTGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L20+          AAGGATGAGTATCAATCGTTATACCATGGACTGAGGGTTCACATTGCACTATGGATCCTG
                      ____________________________________________________________
consensus             AAGGATGAGTATCAATCGTTATACCATGGACTGAGGGTTCACATTGCACTATGGATCCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029L20+          GTTCATGTGTTTGTGTTTTGTGTTTTGCGNTATGAAATTCTGTACTTTATGTATGAATTT
                      ____________________________________________________________
consensus             GTTCATGTGTTTGTGTTTTGTGTTTTGCGNTATGAAATTCTGTACTTTATGTATGAATTT