| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF022D21 | Sequence | 302 | 000737 (9) | 772 | 001394 (6) | ref|XP_009762701.1| | 6e-21 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy | |||
| JMSF029C01 | Sequence | 304 | 000737 (9) | 688 | 001394 (6) | ref|XP_004248174.1| | 2e-16 | PREDICTED: putative late blight resistance protein homolog R1B-12 [Solanum lyco | |||
| JMSF035F04 | Sequence | 632 | 001394 (6) | ref|XP_009762701.1| | 5e-23 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy | 735 | 001394 (6) | ref|XP_009762701.1| | 1e-20 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy |
| JMSF037F04 | Sequence | 634 | 001394 (6) | ref|XP_009762701.1| | 5e-23 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy | 716 | 001394 (6) | ref|XP_009762701.1| | 1e-19 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy |
This contig is upended
. : . : . : . : . : . :
JMSF035F04- TTTTGCGTGAGCTTGAGAAATTAATGATTGCAT
JMSF037F04- TTTTGCGTGAGCTTGAGAAATTAATGATTGCAT
____________________________________________________________
consensus TTTTGCGTGAGCTTGAGAAATTAATGATTGCAT
. : . : . : . : . : . :
JMSF035F04- TTCGGAAAGGCTCGTCATTAGGCCTTCAGAATCTGGATTGTTTGCCAAAATGCCTCAACA
JMSF037F04- TTCGGAAAGGCTCGTCATTAGGCCTTCAGAATCTGGATTGTTTGCCAAAATGCCTCAACA
rJMSF022D21+ GGCTCGTCATTAGGCCTTCAGAATCTGGATTGTTTGCCAAAATGCCTCAACA
rJMSF035F04+ CAAAATGCCTCAACA
____________________________________________________________
consensus TTCGGAAAGGCTCGTCATTAGGCCTTCAGAATCTGGATTGTTTGCCAAAATGCCTCAACA
. : . : . : . : . : . :
JMSF035F04- TCAAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
JMSF037F04- TCAAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
rJMSF022D21+ TCAAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
rJMSF037F04+ AAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
rJMSF035F04+ TCAAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
rJMSF029C01+ TGGAGTGAAATAAGTGCAATTAGCA
____________________________________________________________
consensus TCAAGAAACTGAAATTGAAGAGAACTTGTTTGCCTTGGAGTGAAATAAGTGCAATTAGCA
. : . : . : . : . : . :
JMSF035F04- TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAGTTGGGAAG
JMSF037F04- TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAGTTGGGAAG
rJMSF022D21+ TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAATTGGGAAG
rJMSF037F04+ TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAGTTGGGAAG
rJMSF035F04+ TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAGTTGGGAAG
rJMSF029C01+ TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAATTGGGAAG
____________________________________________________________
consensus TGCTTCCTCATCTTGAGGTGCTAAAACTGAAAGAAGCCTCCAGTGAATCAAGTTGGGAAG
. : . : . : . : . : . :
JMSF035F04- GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
JMSF037F04- GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
rJMSF022D21+ GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
rJMSF037F04+ GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
rJMSF035F04+ GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
rJMSF029C01+ GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
____________________________________________________________
consensus GCACTGACAGAAGTTTTAGAAAGCTAAAATCCTTGTTCCTAGAAGCTAAAAACCTCATTT
. : . : . : . : . : . :
JMSF035F04- CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
JMSF037F04- CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
rJMSF022D21+ CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
rJMSF037F04+ CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
rJMSF035F04+ CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
rJMSF029C01+ CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
____________________________________________________________
consensus CTTGGCAACTTAATGAGGAGGAACAATTTCCTTGCCTTGAGCGCTTAGTCCTTAAAAGGT
. : . : . : . : . : . :
JMSF035F04- GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
JMSF037F04- GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
rJMSF022D21+ GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
rJMSF037F04+ GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
rJMSF035F04+ GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
rJMSF029C01+ GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
____________________________________________________________
consensus GTTCGAGTTTGGTAGTGATTCCGACTGACTTTGAATGTATCATACCACTGAAGTCAATTG
. : . : . : . : . : . :
JMSF035F04- AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
JMSF037F04- AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
rJMSF022D21+ AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
rJMSF037F04+ AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
rJMSF035F04+ AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
rJMSF029C01+ AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
____________________________________________________________
consensus AAATAAAAAATTGTTCCCCTTCTGTTTTGGAGTCCGCCCATTCGGTTAATGAAAACCGGC
. : . : . : . : . : . :
JMSF035F04- AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
JMSF037F04- AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
rJMSF022D21+ AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
rJMSF037F04+ AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
rJMSF035F04+ AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
rJMSF029C01+ AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
____________________________________________________________
consensus AGGACCTTTATGGATACGAAGCCATTGTTATTCGCCATGTGGACCAAATCGAAGAAGGAG
. : . : . : . : . : . :
JMSF035F04- TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
JMSF037F04- TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
rJMSF022D21+ TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
rJMSF037F04+ TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
rJMSF035F04+ TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
rJMSF029C01+ TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
____________________________________________________________
consensus TTGATGATGATGACGACGATGACGACGATGATGAAGAAGAAGAAGAAGAATAAATGAATG
. : . : . : . : . : . :
JMSF035F04- GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTG
JMSF037F04- GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
rJMSF022D21+ GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
rJMSF037F04+ GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
rJMSF035F04+ GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
rJMSF029C01+ GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
____________________________________________________________
consensus GGATATCAATGATTTCAATGTGGTTGATTTGTAGGATTGGAGTGTGGTTTTGGTGATTGA
. : . : . : . : . : . :
JMSF037F04- T
rJMSF022D21+ TAAGTGTTGGAGTTTGCTTTTTGAATTATCATCAGGACAGTGGATTCCTTGCGTTTGCTT
rJMSF037F04+ TAAGTGTTGGAGTTTGCTTTTTGAATTATCATCAGGACAGTGGATTCCTTGCGTTTGCTT
rJMSF035F04+ TAAGTGTTGGAGTTTGCTTTTTGAATTATCATCAGGACAGTGGATTCCTTGCGTTTGCTT
rJMSF029C01+ TAAGTGTTGGAGTTTGCTTTTTGAATTATCATCAGGACAGTGGATTCCTTGCGTTTGCTT
____________________________________________________________
consensus TAAGTGTTGGAGTTTGCTTTTTGAATTATCATCAGGACAGTGGATTCCTTGCGTTTGCTT
. : . : . : . : . : . :
rJMSF022D21+ TTTGCCTTTTTCTCAAGAATGATTGTGTTGTTTGTTACATGTTTGTGTAATTGTATAAAT
rJMSF037F04+ TTTGCCTTTTTCTCAAGAATGATTGTGTTGTTTGTTACATGTTTGTGTAATTGTATAAAT
rJMSF035F04+ TTTGCCTTTTTCTCAAGAATGATTGTGTTGTTTGTTACATGTTTGTGTAATTGTATAAAT
rJMSF029C01+ TTTGCCTTTTTCTCAAGAATGATTGTGTTGTTTGTTACATGTTTGTGTAATTGTATAAAT
____________________________________________________________
consensus TTTGCCTTTTTCTCAAGAATGATTGTGTTGTTTGTTACATGTTTGTGTAATTGTATAAAT
. : . : . : . : . : . :
rJMSF022D21+ TATTGAGTTTGTATTATTGTTGCTTTGAGTCTTCCATATCCTCAG
rJMSF037F04+ TATTGAGTTTGTATTATTGTTGCTTTGAGTCTTCCATATCCTCAG
rJMSF035F04+ TATTGAGTTTGTATTATTGTTGCTTTGAGTCTTCCATATCCTCAG
rJMSF029C01+ TATTGAGTTTGTATTATTGTTGCTTTGAGTCTTCCATATCCTCAGTACAAAGAATGCTTG
____________________________________________________________
consensus TATTGAGTTTGTATTATTGTTGCTTTGAGTCTTCCATATCCTCAGTACAAAGAATGCTTG