Contig 001390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027K04Sequence639021075ref|XP_009621084.1|1e-20PREDICTED: histone acetyltransferase GCN5 isoform X9 [Nicotiana tomentosiformis727001390 (2)ref|XP_009621076.1|1e-36PREDICTED: histone acetyltransferase GCN5 isoform X1 [Nicotiana tomentosiformis
JMSF043I03Sequence678022223ref|XP_006341330.1|3e-29PREDICTED: histone acetyltransferase GCN5-like [Solanum tuberosum]782001390 (2)ref|XP_009786542.1|5e-164PREDICTED: histone acetyltransferase GCN5 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF043I03+                                                    AANCAGTTTGCACGTGAT
                      ____________________________________________________________
consensus                                                       AANCAGTTTGCACGTGAT
 
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rJMSF043I03+          GATGATGGCCTAACGCACNTTTCTCACATATGCTGACAATAATGCTGTTGGTTACTTTGT
                      ____________________________________________________________
consensus             GATGATGGCCTAACGCACNTTTCTCACATATGCTGACAATAATGCTGTTGGTTACTTTGT
 
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rJMSF043I03+          CAAACAGGGGTTTACAAAGGAGATATATTTGGAGAAAGAACGTTGGCAAGGGTACATTAA
                      ____________________________________________________________
consensus             CAAACAGGGGTTTACAAAGGAGATATATTTGGAGAAAGAACGTTGGCAAGGGTACATTAA
 
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rJMSF043I03+          AGATTACGATGGAGGAATACTTATGGAATGCAAAATAGATCCAAAGCTTCCTTATACTGA
                      ____________________________________________________________
consensus             AGATTACGATGGAGGAATACTTATGGAATGCAAAATAGATCCAAAGCTTCCTTATACTGA
 
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rJMSF043I03+          TTTATCTACCATGATACGCCGTCAGAGGCAGGCAATTGATGAAAAGATACGAGAACTTTC
                      ____________________________________________________________
consensus             TTTATCTACCATGATACGCCGTCAGAGGCAGGCAATTGATGAAAAGATACGAGAACTTTC
 
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rJMSF043I03+          AAATTGTCACATTGTCTACCAAGGAATTGATTTTCACAAGAAGGAAGCAGGTATTCCCAA
                      ____________________________________________________________
consensus             AAATTGTCACATTGTCTACCAAGGAATTGATTTTCACAAGAAGGAAGCAGGTATTCCCAA
 
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rJMSF043I03+          AAAAGCCTTCAAGGTGGAGGATATTGCTGGTTTAAGAGAAGCTGGGTGGACCATTGATCA
                      ____________________________________________________________
consensus             AAAAGCCTTCAAGGTGGAGGATATTGCTGGTTTAAGAGAAGCTGGGTGGACCATTGATCA
 
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rJMSF043I03+          ATATGGTTATTCTCGGTTTAAAACAATGAACTCGTTGTCGGATCAGAAGTCATTGACAGC
                      ____________________________________________________________
consensus             ATATGGTTATTCTCGGTTTAAAACAATGAACTCGTTGTCGGATCAGAAGTCATTGACAGC
 
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rJMSF043I03+          ATTCATGCGCTCACTTGTAAAGGCTATGCATGACCATCCTGATGCTTGGCCATTCAAGGA
rJMSF027K04+                                                               TCAAGGA
                      ____________________________________________________________
consensus             ATTCATGCGCTCACTTGTAAAGGCTATGCATGACCATCCTGATGCTTGGCCATTCAAGGA
 
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rJMSF043I03+          ACCAGTCGATCCACGGGATGTCCCTGATTATTATGAGATCATCAAGGATGCAATGGATTT
rJMSF027K04+          ACCAGTCGATGCACGGGATGTCCCTGATTATTATGAGATCATCAAGGATCCAATGGATTT
                      ____________________________________________________________
consensus             ACCAGTCGATGCACGGGATGTCCCTGATTATTATGAGATCATCAAGGATGCAATGGATTT
 
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rJMSF043I03+          GAAAACGATGTCAAAGCGGGTTGAGTCAGAGCTGTACTATGTCACGTTTGACATGTTTGT
rJMSF027K04+          GAAAACAATGTCAAAGCGGGTTGACTCGGAGCTGTACTATGTCACGTTTGACATGTTTGT
                      ____________________________________________________________
consensus             GAAAACGATGTCAAAGCGGGTTGAGTCGGAGCTGTACTATGTCACGTTTGACATGTTTGT
 
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rJMSF043I03+          TGCGGATGTGAGGAGGATGTTTAACAATGCTCGCACCTACAATTCTCCCGAAACCATTTA
rJMSF027K04+          TGCGGATGTCAGGAGGATGTTTAACAATGCTCGGACCTATAATTCTCCTGAAACCATTTA
                      ____________________________________________________________
consensus             TGCGGATGTGAGGAGGATGTTTAACAATGCTCGGACCTATAATTCTCCTGAAACCATTTA
 
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rJMSF043I03+          CTATAAATGTGCAACCAGG                                         
rJMSF027K04+          CTATAAATGTGCAACCAGGTACAATACAAGAACCCTTTTTATCATTTCATTTGAGCCTTT
                      ____________________________________________________________
consensus             CTATAAATGTGCAACCAGGTACAATACAAGAACCCTTTTTATCATTTCATTTGAGCCTTT
 
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rJMSF027K04+          TCCTTATTATTATTTCTTTTCATCCAATATTTGCAAACATTCAAAAACTGATGAACCACC
                      ____________________________________________________________
consensus             TCCTTATTATTATTTCTTTTCATCCAATATTTGCAAACATTCAAAAACTGATGAACCACC
 
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rJMSF027K04+          TGTAGGCTGGAAGCACATTTCTCAAACAAAGTTCAAGCTGGTCTACAGTCTAGTGTTAAA
                      ____________________________________________________________
consensus             TGTAGGCTGGAAGCACATTTCTCAAACAAAGTTCAAGCTGGTCTACAGTCTAGTGTTAAA
 
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rJMSF027K04+          ATTCAATAGCTACCAAGGTCTTCACAAGTGGACAGACTTTATTGCCCCGCTTTCTAAATT
                      ____________________________________________________________
consensus             ATTCAATAGCTACCAAGGTCTTCACAAGTGGACAGACTTTATTGCCCCGCTTTCTAAATT
 
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rJMSF027K04+          ATTTAACTTAGTGTTTCCATAATTATGATCAAAGTTACTGGCAGAAGCACTAGAATTATG
                      ____________________________________________________________
consensus             ATTTAACTTAGTGTTTCCATAATTATGATCAAAGTTACTGGCAGAAGCACTAGAATTATG
 
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rJMSF027K04+          TATGGGGTAATGTTGGGATTTTAATGCACACAAGTCAGCATGAAAGTATACACTCTGTAT
                      ____________________________________________________________
consensus             TATGGGGTAATGTTGGGATTTTAATGCACACAAGTCAGCATGAAAGTATACACTCTGTAT
 
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rJMSF027K04+          AGTCTGTACTCTTAAGGGAGCGTTTAGTTCACAGAATGTAATGTAAAACTTGGTAATAGG
                      ____________________________________________________________
consensus             AGTCTGTACTCTTAAGGGAGCGTTTAGTTCACAGAATGTAATGTAAAACTTGGTAATAGG
 
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rJMSF027K04+          GTTACTTTTTAAGAGTAAGATTACTTGGTAATAGGGTTACTTTTCAAGAGGTCATGTGAT
                      ____________________________________________________________
consensus             GTTACTTTTTAAGAGTAAGATTACTTGGTAATAGGGTTACTTTTCAAGAGGTCATGTGAT
 
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rJMSF027K04+          CTAACGTAAGGTTACTTTGTATGTTTAGTTGTAATTGTAGGAATGTAAAATTAACAAGTT
                      ____________________________________________________________
consensus             CTAACGTAAGGTTACTTTGTATGTTTAGTTGTAATTGTAGGAATGTAAAATTAACAAGTT