Contig 001389:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027H02Sequence721001389 (3)ref|XP_011071784.1|220PREDICTED: uncharacterized protein LOC105157169 [Sesamum indicum] ref|XP_0110717
JMSF048D06Sequence705001389 (3)ref|XP_002511459.1|2e-56Methyltransferase gidB, putative [Ricinus communis] gb|EEF52061.1| Methyltransfe752001389 (3)ref|XP_006345012.1|184PREDICTED: uncharacterized protein LOC102582173 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-                                                GGCATCCATTTTCTGTCGGGACT
                      ____________________________________________________________
consensus                                                  GGCATCCATTTTCTGTCGGGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           TTTTTCAAACACCTTTCACCTCCCAAAACTTCCGTCCTTAAACCAATCAGCAAATCCTTG
                      ____________________________________________________________
consensus             TTTTTCAAACACCTTTCACCTCCCAAAACTTCCGTCCTTAAACCAATCAGCAAATCCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           GTCACCGTCGCCTCCGCCGCACCTCCTGCCACTCCCCATTTCGGAGCCCTCAATTCTCAC
                      ____________________________________________________________
consensus             GTCACCGTCGCCTCCGCCGCACCTCCTGCCACTCCCCATTTCGGAGCCCTCAATTCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           CAGAAGCAACAAGTCCATGTCTACATCGATTCTCTTCTCCAGTGGAACCAGGTTCCTTTC
                      ____________________________________________________________
consensus             CAGAAGCAACAAGTCCATGTCTACATCGATTCTCTTCTCCAGTGGAACCAGGTTCCTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           AATATGTTTCTCTGTTATGTGCATGTGCCTGTATCTTATATGTGAAACCTTTGAGATTTT
                      ____________________________________________________________
consensus             AATATGTTTCTCTGTTATGTGCATGTGCCTGTATCTTATATGTGAAACCTTTGAGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           ACTGCTTGCAGAAAATGAATCTCACGGCGGTGAGGGAGGAAAGTGAGGTCATGGAAAGAC
                      ____________________________________________________________
consensus             ACTGCTTGCAGAAAATGAATCTCACGGCGGTGAGGGAGGAAAGTGAGGTCATGGAAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           ACATCGAGGACTCGCTTGCAATTATCGAGCCGATTCGAAATTCCTATGTGTCACGTTGTG
                      ____________________________________________________________
consensus             ACATCGAGGACTCGCTTGCAATTATCGAGCCGATTCGAAATTCCTATGTGTCACGTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           GTGCTTCTTCTGAGAATCTTAAGATTGTCGATGTAGGCACTGGAGCGGGGCTTCCTGGAC
                      ____________________________________________________________
consensus             GTGCTTCTTCTGAGAATCTTAAGATTGTCGATGTAGGCACTGGAGCGGGGCTTCCTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           TTATATTAGCTATTGCTTGCCCTGATTGGAAAGTGACACTTCTAGAATCTTTGAATAAGC
rJMSF048D06+                                TGATTGGAAAGTGACACTTCTAGAATCTTTGAATAAGC
rJMSF027H02+                                                                ATAAGC
                      ____________________________________________________________
consensus             TTATATTAGCTATTGCTTGCCCTGATTGGAAAGTGACACTTCTAGAATCTTTGAATAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           GATGCCAATTTTTGGAGCATGTGGCT-GGGGAAACTGGTCTGTCAAATGTGGAAGTTATA
rJMSF048D06+          GATGCCAATTTTTGGAGCATGTGGCT-GGGGAAACTGGTCTGTCAAATGTGGAAGTTATA
rJMSF027H02+          GATGCCAATTTTTGGAGCATGTGGCTGGGGGAAACTGGTCTGTCAAATGTGGAAGTTATA
                      ____________________________________________________________
consensus             GATGCCAATTTTTGGAGCATGTGGCT-GGGGAAACTGGTCTGTCAAATGTGGAAGTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           AGAGAAAGGGCTGAGGACAGAATTTAGGGCAAAATCAGAACTTCAGAGAGTCATTTGATG
rJMSF048D06+          AGAGAAAGGGCTGAGGACAGAATTTAGGGCAAAATCAGAACTTCAGAGAGTCATTTGATG
rJMSF027H02+          AGAGAAAGGGCTGAG-----AATTTAGGGCAAAATCAGAACTTCAGAGAGTCATTTGATG
                      ____________________________________________________________
consensus             AGAGAAAGGGCTGAGGACAGAATTTAGGGCAAAATCAGAACTTCAGAGAGTCATTTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           TTGCAATAGCCAGAGTAGTTGCAGAAATGAGAATTTTAGCTGAATATTGCCTTCCTCTCG
rJMSF048D06+          TTGCAATAGCCAGAGTAGTTGCAGAAATGAGAATTTTAGCTGAATATTGCCTTCCTCTCG
rJMSF027H02+          TTGCAATAGCCAGAGCAGTTGCAGAAATGAGAATTTTAGCTGAATATTGCCTTCCTCTCG
                      ____________________________________________________________
consensus             TTGCAATAGCCAGAGTAGTTGCAGAAATGAGAATTTTAGCTGAATATTGCCTTCCTCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048D06-           TTCGCGTTGGTGGCTTGNTTGTA                                     
rJMSF048D06+          TTCGCGTTGGTGGCTTGTTTGTAGCTGCAAAGGGTCATGATCCTCAGGAGGAAGTGAGAA
rJMSF027H02+          TTCGCGTTGGTGGCTTGTTTGTAGCTGCAAAGGGTCATGATCCTCAGGAGGAAGTGAGAA
                      ____________________________________________________________
consensus             TTCGCGTTGGTGGCTTGTTTGTAGCTGCAAAGGGTCATGATCCTCAGGAGGAAGTGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          GAGCAGAGAGAGCAATACATTTGATGGGTGCAACTCTATGGCAAACTTGCTATGTTGATT
rJMSF027H02+          GAGCAGAGAGAGCAATACATTTGATGGGTGCAACTCTATGGCAAACTTGCTATGTTGATT
                      ____________________________________________________________
consensus             GAGCAGAGAGAGCAATACATTTGATGGGTGCAACTCTATGGCAAACTTGCTATGTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          CACACAGTAAGTATGGGCAGAGAACTGCCATCGTTTGCTTGAAAGGTGGTCCAACCCCAA
rJMSF027H02+          CACACAGTAAGTATGGGCAGAGAACTGCCATCGTTTGCTTGAAAGGTGGTCCAACCCCAA
                      ____________________________________________________________
consensus             CACACAGTAAGTATGGGCAGAGAACTGCCATCGTTTGCTTGAAAGGTGGTCCAACCCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          AGAAATATCCCAGAGATCCAGGAACTCCAGCAAAGTTACCTCTTTAAATATGGTGAATTT
rJMSF027H02+          AGAAATATCCCAGAGATCCAGGAACTCCAGCAAAGTTACCTCTTTAAATATGGTGAATTT
                      ____________________________________________________________
consensus             AGAAATATCCCAGAGATCCAGGAACTCCAGCAAAGTTACCTCTTTAAATATGGTGAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          TATACCCCTGCTAAGTTTTCCTACTTGTACAGCAGCTTTGATAATAGGACAGCACCTCAC
rJMSF027H02+          TATACCCCTGCTAAGTTTTCCTACTTGTACAGCAGCTTTGATAATAGGACAGCACCTCAC
                      ____________________________________________________________
consensus             TATACCCCTGCTAAGTTTTCCTACTTGTACAGCAGCTTTGATAATAGGACAGCACCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          ATTTGAAGTAGGGTGCAATGGTCAATGCCCAAATGACAGGAGCTATGTGCAAACACTCTT
rJMSF027H02+          ATTTGAAGTAGGGTGCAATGGTCAATGCCCAAATGACAGGAGCTATGTGCAAACACTCTT
                      ____________________________________________________________
consensus             ATTTGAAGTAGGGTGCAATGGTCAATGCCCAAATGACAGGAGCTATGTGCAAACACTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          CCCTCAAATTTGAAACTATTCTTACCAGTATAAACAAGATGTTACCAACTTTGTGGCTCA
rJMSF027H02+          CCCTCAAATTTGAAACTATTCTTACCAGTATAAACAAGATGTTACCAACTTTGTGGCTCA
                      ____________________________________________________________
consensus             CCCTCAAATTTGAAACTATTCTTACCAGTATAAACAAGATGTTACCAACTTTGTGGCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          CTGCCATGAAATTGATCGGCATTTTTGGGAGGTACTGGAGAAAGAGCTGAGTGGTGGTGG
rJMSF027H02+          CTGCCATGAAATTGATCGGCATTTTTGGGAGGTACTGGAGAAAGAGCTGAGTGGTGGTGG
                      ____________________________________________________________
consensus             CTGCCATGAAATTGATCGGCATTTTTGGGAGGTACTGGAGAAAGAGCTGAGTGGTGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048D06+          CTCCTGAATCTGTTCTTGAAGCTGCTAATTGCAGCACAGCACAGCAGAAATGCAC     
rJMSF027H02+          CTCCTGAATCTGTTCTTGAAGCTGCTAATTGCAGCACAGCACAGCAGAAATGCACAGAAA
                      ____________________________________________________________
consensus             CTCCTGAATCTGTTCTTGAAGCTGCTAATTGCAGCACAGCACAGCAGAAATGCACAGAAA