Contig 001388:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF014N02-                   GTTTAAGCCTTCAAATCCCCTTCAAAGTTCAAACCCAAGCACTCTCACTCAA
JMSF013N02-                   GTTTAAGCCTTCAAATCCCCTTCAAAGTTCAAACCCAAGCACTCTCACTCAA
                      ____________________________________________________________
consensus                     GTTTAAGCCTTCAAATCCCCTTCAAAGTTCAAACCCAAGCACTCTCACTCAA
 
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JMSF014N02-           CTCATCTACAATGGCGGCTACCTTTTATCAGCCGCCATCTTCACTGAATCTCAATAGACT
JMSF013N02-           CTCATCTACAATGGCGGCTACCTTTTATCAGCCGCCATCTTCACTGAATCTCAATAGACT
                      ____________________________________________________________
consensus             CTCATCTACAATGGCGGCTACCTTTTATCAGCCGCCATCTTCACTGAATCTCAATAGACT
 
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JMSF014N02-           GAACCCCTCTATCTCTATCTCTTCTACAAGACATCCCAACCCTCCGCTTTGTTTACCCGC
JMSF013N02-           GAACCCCTCTATCTCTATCTCTTCTACAAGACATCCCAACCCTCCGCTTTGTTTACCCGC
JMSF027E07-                       CTCTATCTCTTCTACAAGACATCCCAACCCTCCGCTTTGTTTACCCGC
                      ____________________________________________________________
consensus             GAACCCCTCTATCTCTATCTCTTCTACAAGACATCCCAACCCTCCGCTTTGTTTACCCGC
 
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JMSF014N02-           TCTTAATATTAGCCGATGCGGCCCACTGTTTTCTGCAGTTACTTCTTCCACCCTCGNCGT
JMSF013N02-           TCTTAATATTAGCCGATGCGGCCCACTGTTTTCTGCAGTTACTTCTTCCACCCTCGCCGT
JMSF027E07-           TCTTAATATTAGCCGATGCGGCCCACTGTTTTCTGCAGTTACTTCTTCCACCCTCGCCGT
                      ____________________________________________________________
consensus             TCTTAATATTAGCCGATGCGGCCCACTGTTTTCTGCAGTTACTTCTTCCACCCTCGCCGT
 
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JMSF014N02-           TTCTG                                                       
JMSF013N02-           TTCTG                                                       
JMSF027E07-           TTCTGACCCAGAACCGGTTTACGCCTCCGTCAAGTCTTTTGCTCCGGCCACCGTCGCTAA
                      ____________________________________________________________
consensus             TTCTGACCCAGAACCGGTTTACGCCTCCGTCAAGTCTTTTGCTCCGGCCACCGTCGCTAA
 
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JMSF027E07-           TCTTGGCCCCGGCTTCGACTTCCTCGGTTGCGCCGTCGATGGCATCGGCGATTTCGTCAC
                      ____________________________________________________________
consensus             TCTTGGCCCCGGCTTCGACTTCCTCGGTTGCGCCGTCGATGGCATCGGCGATTTCGTCAC
 
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JMSF027E07-           CGTCCGCGTTGATCCGGACGTTCCTCCCGGGCAAGTGTCCATTTCTGAAATCTCCGGGGC
                      ____________________________________________________________
consensus             CGTCCGCGTTGATCCGGACGTTCCTCCCGGGCAAGTGTCCATTTCTGAAATCTCCGGGGC
 
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JMSF027E07-           GGGGAATAAGCTCAGCAAGAATCCGCTCTGGAACTGTGCCGGTATTGCCGCCATTGCTGT
                      ____________________________________________________________
consensus             GGGGAATAAGCTCAGCAAGAATCCGCTCTGGAACTGTGCCGGTATTGCCGCCATTGCTGT
 
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JMSF027E07-           TATGAAGATGCTTCGCATCCAATCCGTAGGGCTCTCCCTCTCCCTTGAGAAGGGGTTGCC
                      ____________________________________________________________
consensus             TATGAAGATGCTTCGCATCCAATCCGTAGGGCTCTCCCTCTCCCTTGAGAAGGGGTTGCC
 
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JMSF027E07-           CTTGGGGAGTGGATTAGGGTCCAGCGCCGCCAGCGCTGCCGCGGCCGCCGTCGCAGTGAA
                      ____________________________________________________________
consensus             CTTGGGGAGTGGATTAGGGTCCAGCGCCGCCAGCGCTGCCGCGGCCGCCGTCGCAGTGAA
 
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JMSF027E07-           TGAGCTATTCGGCAGCCGATTGTCCGTCTCGGACCTTGTCTTCGCGGGTCTAGAATCGGA
rJMSF014N02+                                                 CTTCGCGGGTCTAGAATCGGA
rJMSF013N02+                                                                ATCGGA
rJMSF027E07+                                                 CTTCGCGGGTCTAGAATCGGA
                      ____________________________________________________________
consensus             TGAGCTATTCGGCAGCCGATTGTCCGTCTCGGACCTTGTCTTCGCGGGTCTAGAATCGGA
 
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JMSF027E07-           ATCCAAGGTCTCCGGGTACCACGCGGATAATGTGGCGCCGTCTATCATGGGAGGGTTTGT
rJMSF014N02+          ATCCAAGGTCTCCGGGTACCACGCGGATAATGTGGCGCCGTCTATCATGGGAGGGTTTGT
rJMSF013N02+          ATCCAAGGTCTCCGGGTACCACGCGGATAATGTGGCGCCGTCTATCATGGGAGGGTTTGT
rJMSF027E07+          ATCCAAGGTCTCCGGGTACCACGCGGATAATGTGGCGCCGTCTATCATGGGAGGGTTTGT
                      ____________________________________________________________
consensus             ATCCAAGGTCTCCGGGTACCACGCGGATAATGTGGCGCCGTCTATCATGGGAGGGTTTGT
 
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JMSF027E07-           GCTCATTCGTAGCTACGACCCGTTGGAGCTGATCCAA                       
rJMSF014N02+          GCTCATTCGTAGCTACGACCCGTTGGAGCTGATCCAATTAAAGTTCCCCCAAGAAAAGAG
rJMSF013N02+          GCTCATTCGTAGCTACGACCCGTTGGAGCTGATCCAATTAAAGTTCCCCCAAGAAAAGAG
rJMSF027E07+          GCTCATTCGTAGCTACGACCCGTTGGAGCTGATCCAATTAAAGTTCCCCCAAGAAAAGAG
                      ____________________________________________________________
consensus             GCTCATTCGTAGCTACGACCCGTTGGAGCTGATCCAATTAAAGTTCCCCCAAGAAAAGAG
 
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rJMSF014N02+          CCTCTTCTTCGTCCTGGTGAACCCGGAATTCGAAGCTCCGACGAAGAAGATGAGGGCGGC
rJMSF013N02+          CCTCTTCTTCGTCCTGGTGAACCCGGAATTCGAAGCTCCGACGAAGAAGATGAGGGCGGC
rJMSF027E07+          CCTCTTCTTCGTCCTGGTGAACCCGGAATTCGAAGCTCCGACGAAGAAGATGAGGGCGGC
                      ____________________________________________________________
consensus             CCTCTTCTTCGTCCTGGTGAACCCGGAATTCGAAGCTCCGACGAAGAAGATGAGGGCGGC
 
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rJMSF014N02+          GCTGCCGGCGGAGATAACGATGTCGAGCCACGTGTGGAACTGCAGTCAGGCCGGGGCTCT
rJMSF013N02+          GCTGCCGGCGGAGATAACGATGTCGAGCCACGTGTGGAACTGCAGTCAGGCCGGGGCTCT
rJMSF027E07+          GCTGCCGGCGGAGATAACGATGTCGAGCCACGTGTGGAACTGCAGTCAGGCCGGGGCTCT
                      ____________________________________________________________
consensus             GCTGCCGGCGGAGATAACGATGTCGAGCCACGTGTGGAACTGCAGTCAGGCCGGGGCTCT
 
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rJMSF014N02+          GGTGGCGTCTGTGTTGCAAGGAGACTTGCCGGGCCTGGGGAAGGCGCTTTCATCGGATAA
rJMSF013N02+          GGTGGCGTCTGTGTTGCAAGGAGACTTGCCGGGCCTGGGGAAGGCGCTTTCATCGGATAA
rJMSF027E07+          GGTGGCGTCTGTGTTGCAAGGAGACTTGCCGGGCCTGGGGAAGGCGCTTTCATCGGATAA
                      ____________________________________________________________
consensus             GGTGGCGTCTGTGTTGCAAGGAGACTTGCCGGGCCTGGGGAAGGCGCTTTCATCGGATAA
 
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rJMSF014N02+          GATCGTGGAGCCGAGAAGAGCTCCGTTGATTCCTGGGATGGAGGCCGTGAAGAAGGCGGC
rJMSF013N02+          GATCGTGGAGCCGAGAAGAGCTCCGTTGATTCCTGGGATGGAGGCCGTGAAGAAGGCGGC
rJMSF027E07+          GATCGTGGAGCCGAGAAGAGCTCCGTTGATTCCTGGGATGGAGGCCGTGAAGAAGGCGGC
                      ____________________________________________________________
consensus             GATCGTGGAGCCGAGAAGAGCTCCGTTGATTCCTGGGATGGAGGCCGTGAAGAAGGCGGC
 
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rJMSF014N02+          TATTCAGGCCGGAGCCTTCGGGTGCACCATCAGCGGTGCGGGACCCACTGCAGTCGCGGT
rJMSF013N02+          TATTCAGGCCGGAGCCTTCGGGTGCACCATCAGCGGTGCGGGACCCACTGCAGTCGCGGT
rJMSF027E07+          TATTCAGGCCGGAGCCTTCGGGTGCACCATCAGCGGTGCGGGACCCACTGCAGTCGCGGT
                      ____________________________________________________________
consensus             TATTCAGGCCGGAGCCTTCGGGTGCACCATCAGCGGTGCGGGACCCACTGCAGTCGCGGT
 
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rJMSF014N02+          TACGGATGATGAGGAAAAGGGAATGGAGATTGGTAAAAGAATGGTAGAAGCCTTTATCCA
rJMSF013N02+          TACGGATGATGAGGAAAAGGGAATGGAGATTGGTAAAAGAATGGTAGAAGCCTTTATCCA
rJMSF027E07+          TACGGATGATGAGGAAAAGGGAATGGAGATTGGTAAAAGAATGGTAGAAGCCTTTATCCA
                      ____________________________________________________________
consensus             TACGGATGATGAGGAAAAGGGAATGGAGATTGGTAAAAGAATGGTAGAAGCCTTTATCCA
 
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rJMSF014N02+          GGAAGGGAATCTCAAGGCCTTGGCTATGGTGAAAAGGCTTGATAGGGTTGGTGCTAGGCT
rJMSF013N02+          GGAAGGGAATCTCAAGGCCTTGGCTATGGTGAAAAGGCTTGATAGGGTTGGTGCTAGGCT
rJMSF027E07+          GGAAGGGAATCTCAAGGCCTTGGCTATGGTGAAAAGGCTTGATAGGGTTGGTGCTAGGCT
                      ____________________________________________________________
consensus             GGAAGGGAATCTCAAGGCCTTGGCTATGGTGAAAAGGCTTGATAGGGTTGGTGCTAGGCT
 
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rJMSF014N02+          GGTCAGCAAGAATGGATCCATTTGTAATTGATTCTTTTTCCAATTCAAGAATCTAATGTT
rJMSF013N02+          GGTCAGCAAGAATGGATCCATTTGTAATTGATTCTTTTTCCAATTCAAGAATCTAATGTT
rJMSF027E07+          GGTCAGCAAGAATGGATCCATTTGTAATTGATTCTTTTTCCAATTCAAGAATCTAATGTT
                      ____________________________________________________________
consensus             GGTCAGCAAGAATGGATCCATTTGTAATTGATTCTTTTTCCAATTCAAGAATCTAATGTT
 
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rJMSF014N02+          CTTTCCACTTTCAAATTCCAGCAATGGATATGAGAGAGATCCCCACCTACCTTCCTCTAG
rJMSF013N02+          CTTTCCACTTTCAAATTCCAGCAATGGATATGAGAGAGATCCCCACCTACCTTCCTCTAG
rJMSF027E07+          CTTTCCACTTTCAAATTCCAGCAATGGATATGAGAGAGATCCCCACCTACCTTCCTCTAG
                      ____________________________________________________________
consensus             CTTTCCACTTTCAAATTCCAGCAATGGATATGAGAGAGATCCCCACCTACCTTCCTCTAG
 
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rJMSF014N02+          TCCTTTATTGGGGATTTGTTAGTAGTATTAGATGATTGGTAAATCCTCCTCAT       
rJMSF013N02+          TCCTTTATTGGGGATTTGTTAGT                                     
rJMSF027E07+          TCCTTTATTGGGGATTTGTTAGT-GTATTAGATGATTGGTAAATCCTCCTCATTCAGAAG
                      ____________________________________________________________
consensus             TCCTTTATTGGGGATTTGTTAGTAGTATTAGATGATTGGTAAATCCTCCTCATTCAGAAG