Contig 001377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024E12Sequence688010739 (5)ref|XP_009800839.1|5e-46PREDICTED: F-box/LRR-repeat protein 3 [Nicotiana sylvestris]719001377 (3)emb|CDP19947.1|2e-86unnamed protein product [Coffea canephora]
JMSF025P08Sequence681010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]755001377 (3)emb|CDP19947.1|3e-94unnamed protein product [Coffea canephora]
JMSF052F01Sequence688010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]943001377 (3)emb|CDP19947.1|2e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF052F01+                     CGGACAGCGCTGCCGGTTTCTCGAGGAGCTTGACGTTACGGATAACGAA
                      ____________________________________________________________
consensus                        CGGACAGCGCTGCCGGTTTCTCGAGGAGCTTGACGTTACGGATAACGAA
 
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rJMSF052F01+          ATTGACAACGAAGGCCTAAAGTCCATTTTCAATGTGCTCGGGACTTTCCTCGTTAAAATT
                      ____________________________________________________________
consensus             ATTGACAACGAAGGCCTAAAGTCCATTTTCAATGTGCTCGGGACTTTCCTCGTTAAAATT
 
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rJMSF052F01+          GGGCATTTGCTTGAACATAACTGACAAGGGGCTTATCCACATTGGCATGTGCTGTCCAAA
                      ____________________________________________________________
consensus             GGGCATTTGCTTGAACATAACTGACAAGGGGCTTATCCACATTGGCATGTGCTGTCCAAA
 
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rJMSF024E12+                                   TCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
rJMSF052F01+          TCTCAAAGAGCTCGATTTATACAGGTCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
rJMSF025P08+                                   TCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
                      ____________________________________________________________
consensus             TCTCAAAGAGCTCGATTTATACAGGTCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
 
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rJMSF024E12+          TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
rJMSF052F01+          TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
rJMSF025P08+          TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
                      ____________________________________________________________
consensus             TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
 
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rJMSF024E12+          TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
rJMSF052F01+          TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
rJMSF025P08+          TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
                      ____________________________________________________________
consensus             TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
 
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rJMSF024E12+          CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
rJMSF052F01+          CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
rJMSF025P08+          CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
                      ____________________________________________________________
consensus             CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
 
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rJMSF024E12+          GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
rJMSF052F01+          GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
rJMSF025P08+          GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
                      ____________________________________________________________
consensus             GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
 
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rJMSF024E12+          CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
rJMSF052F01+          CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
rJMSF025P08+          CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
                      ____________________________________________________________
consensus             CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
 
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rJMSF024E12+          GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
rJMSF052F01+          GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
rJMSF025P08+          GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
                      ____________________________________________________________
consensus             GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
 
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rJMSF024E12+          TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
rJMSF052F01+          TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
rJMSF025P08+          TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGTTGGACTGACAAAAGTGAAACTGCC
                      ____________________________________________________________
consensus             TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
 
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rJMSF024E12+          ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
rJMSF052F01+          ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
rJMSF025P08+          ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
                      ____________________________________________________________
consensus             ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
 
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rJMSF024E12+          TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
rJMSF052F01+          TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
rJMSF025P08+          TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
                      ____________________________________________________________
consensus             TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
 
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rJMSF024E12+          TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
rJMSF052F01+          TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
rJMSF025P08+          TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
                      ____________________________________________________________
consensus             TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
 
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rJMSF024E12+          TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
rJMSF052F01+          TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
rJMSF025P08+          TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
                      ____________________________________________________________
consensus             TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
 
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rJMSF024E12+          ACAGACAGAC                                                  
rJMSF052F01+          ACAGACAGA-CAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTT     
rJMSF025P08+          ACAGACAGACCAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTTCTTGT
                      ____________________________________________________________
consensus             ACAGACAGACCAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTTCTTGT