Contig 001377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024E12Sequence688010739 (5)ref|XP_009800839.1|5e-46PREDICTED: F-box/LRR-repeat protein 3 [Nicotiana sylvestris]719001377 (3)emb|CDP19947.1|2e-86unnamed protein product [Coffea canephora]
JMSF025P08Sequence681010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]755001377 (3)emb|CDP19947.1|3e-94unnamed protein product [Coffea canephora]
JMSF052F01Sequence688010739 (5)ref|XP_006363611.1|2e-61PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]943001377 (3)emb|CDP19947.1|2e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052F01+ CGGACAGCGCTGCCGGTTTCTCGAGGAGCTTGACGTTACGGATAACGAA
                      ____________________________________________________________
consensus CGGACAGCGCTGCCGGTTTCTCGAGGAGCTTGACGTTACGGATAACGAA
 
. : . : . : . : . : . :
rJMSF052F01+ ATTGACAACGAAGGCCTAAAGTCCATTTTCAATGTGCTCGGGACTTTCCTCGTTAAAATT
                      ____________________________________________________________
consensus ATTGACAACGAAGGCCTAAAGTCCATTTTCAATGTGCTCGGGACTTTCCTCGTTAAAATT
 
. : . : . : . : . : . :
rJMSF052F01+ GGGCATTTGCTTGAACATAACTGACAAGGGGCTTATCCACATTGGCATGTGCTGTCCAAA
                      ____________________________________________________________
consensus GGGCATTTGCTTGAACATAACTGACAAGGGGCTTATCCACATTGGCATGTGCTGTCCAAA
 
. : . : . : . : . : . :
rJMSF024E12+ TCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
rJMSF052F01+ TCTCAAAGAGCTCGATTTATACAGGTCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
rJMSF025P08+ TCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
                      ____________________________________________________________
consensus TCTCAAAGAGCTCGATTTATACAGGTCTGCTGGAGTTACTGATTCGGGTATTTATGCGAT
 
. : . : . : . : . : . :
rJMSF024E12+ TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
rJMSF052F01+ TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
rJMSF025P08+ TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
                      ____________________________________________________________
consensus TGCTCGTGGTTGCCTCAGCCTCGAGATGATTAATATAGCCTATTGCAATCGTATTACCGA
 
. : . : . : . : . : . :
rJMSF024E12+ TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
rJMSF052F01+ TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
rJMSF025P08+ TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
                      ____________________________________________________________
consensus TCATTCCTTCGTATCGTTATCCAAGTGTTCAAAGTTAAACACGCTCGAAAGTAGAGGATG
 
. : . : . : . : . : . :
rJMSF024E12+ CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
rJMSF052F01+ CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
rJMSF025P08+ CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
                      ____________________________________________________________
consensus CCCACTTCTCACATCGTCGGGACTAGCTGCAGTTGCTGTCGGTTGCAAGCTACTCGCTAA
 
. : . : . : . : . : . :
rJMSF024E12+ GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
rJMSF052F01+ GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
rJMSF025P08+ GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
                      ____________________________________________________________
consensus GCTAGACATTAAGTGGTGCTACAATATCGACGACTCGGGAATGATTTCGCTTGCTCAATT
 
. : . : . : . : . : . :
rJMSF024E12+ CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
rJMSF052F01+ CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
rJMSF025P08+ CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
                      ____________________________________________________________
consensus CTCGCAAAATCTCAGACAGATAAACTTGTCGTACACCTCGGTCACGGATGTCGGTCTCTT
 
. : . : . : . : . : . :
rJMSF024E12+ GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
rJMSF052F01+ GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
rJMSF025P08+ GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
                      ____________________________________________________________
consensus GTCCCTCGCTAGCATCGGGTGTCTCCAGAGCATGACGGTACTCCACGTGAAGGGGCTGAG
 
. : . : . : . : . : . :
rJMSF024E12+ TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
rJMSF052F01+ TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
rJMSF025P08+ TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGTTGGACTGACAAAAGTGAAACTGCC
                      ____________________________________________________________
consensus TCCTAGTGGACTAGCTGCTGCTCTTCTGGCCTGCGGTGGACTGACAAAAGTGAAACTGCC
 
. : . : . : . : . : . :
rJMSF024E12+ ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
rJMSF052F01+ ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
rJMSF025P08+ ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
                      ____________________________________________________________
consensus ATCTTCGTTTAAATCTATTTTTCCACAACCTCTCATCGAACATTTACAAGTACGAGGTTG
 
. : . : . : . : . : . :
rJMSF024E12+ TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
rJMSF052F01+ TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
rJMSF025P08+ TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
                      ____________________________________________________________
consensus TGGTTTCCAGTGGAGCGACAAGGCGTTTCAGGCGGAATTAGACCCGAAATGCTGGAAACT
 
. : . : . : . : . : . :
rJMSF024E12+ TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
rJMSF052F01+ TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
rJMSF025P08+ TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
                      ____________________________________________________________
consensus TCAAATGGACGACGTGGAGTAAAGACTAAAGATCCACCATTTGATGATTAAACTGCGGCT
 
. : . : . : . : . : . :
rJMSF024E12+ TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
rJMSF052F01+ TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
rJMSF025P08+ TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
                      ____________________________________________________________
consensus TTTTAATCGAATTTTTTTTGTGGATTGGTACATTTATAAACTCTACTGATCATATCTCTT
 
. : . : . : . : . : . :
rJMSF024E12+ ACAGACAGAC
rJMSF052F01+ ACAGACAGA-CAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTT
rJMSF025P08+ ACAGACAGACCAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTTCTTGT
                      ____________________________________________________________
consensus ACAGACAGACCAGTAGAGAAAATTTGTCTGTTAATCAATGTCATTAAGGAAGGTTCTTGT